Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq32757 152 2e-32 seq39735 150 5e-32 seq455362 96.9 1e-15 >seq32757 Length=9777 Score = 152 bits (168), Expect = 2e-32 Identities = 222/310 (72%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || |||| |||||||||| ||||| || | ||| || || | | || ||||||||| Sbjct 4008 GGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCAC 3949 Query 26519 TGTCTCCCTGCATAT-GCT-GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATG 26576 | | || ||||| || ||||| || | ||||||||| | | ||| || | ||| | Sbjct 3948 TCACGACC--CATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 3891 Query 26577 GTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTA 26636 | || || ||||||| ||| || || | | | |||||||| || |||||||| || | Sbjct 3890 GGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCA 3831 Query 26637 GTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTA 26696 || || || ||| | |||| | || || || || |||||||||||||| | || Sbjct 3830 AACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTA 3771 Query 26697 ACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGG 26756 | || || ||||| || ||||| || ||||| |||||||| || ||||| || ||||| | Sbjct 3770 AAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAG 3711 Query 26757 CAAGTATAAA 26766 ||| ||||| Sbjct 3710 CAATAATAAA 3701 >seq39735 Length=4112 Score = 150 bits (166), Expect = 5e-32 Identities = 220/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 26126 TGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCT 26185 || || || |||| ||||| || || || || || || |||||||| || ||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 26186 TGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAG 26245 || || || | || || | ||| || | | ||||| ||||| || | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 || || |||||| || ||||||||| ||| || | || || || || ||||| ||| Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||||||||| || || || || || ||||||||||| | ||| ||| Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || |||||||||||||| || |||||||| || ||| ||| || ||||| || | || Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 26426 TAAACTAAGAA 26436 || | ||||| Sbjct 1683 TAGATCAAGAA 1673 >seq455362 Length=6327 Score = 96.9 bits (106), Expect = 1e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725 || || || || |||||||||||||| | ||| || || ||||| || ||||| || ||| Sbjct 707 GCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCA 766 Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGA 26783 || |||||||| || ||||| || ||||| |||| ||||| ||| | ||| || | | | Sbjct 767 TCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGCGGTCAA 825 Query 26784 GTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| |||| ||||| | || | |||||||| | || ||||| || Sbjct 826 TAAAGTAGGG-ATCATCAAAACACAAAACCATCCAATGTAAAGACGCTT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146614005558720