Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq39735 205 1e-47 seq32757 201 1e-46 seq455362 111 2e-19 >seq39735 Length=4112 Score = 205 bits (226), Expect = 1e-47 Identities = 221/293 (75%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| || ||||| | |||||||| || |||||||||||||| |||| ||| Sbjct 1691 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 1750 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA 155529 | || |||||||| || ||||| |||||||||||||| || |||||||| || || || Sbjct 1751 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCT 1810 Query 155530 GGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTA 155589 ||||| || || || || || ||| ||||||||| ||||| ||||| || ||| | Sbjct 1811 GGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 1870 Query 155590 ATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 155649 ||| | ||||| || || | || ||| || | ||||||| ||||| ||||| ||| Sbjct 1871 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 1930 Query 155650 GAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCA 155702 ||||| ||||| || || || |||||||| || || || || | |||||||| Sbjct 1931 GAAACCTATAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 201 bits (222), Expect = 1e-46 Identities = 239/323 (74%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| | || ||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| |||||| | || || ||||| || || || ||||| || |||||| ||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || ||| | ||||| || || || |||||||| || || ||||||| ||||| ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301 || ||||| |||| | || | || | |||||| | | || | ||| | || | Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAT 3937 Query 155302 ---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCA 155358 |||||| ||||||||||| || |||||| || ||||| |||||||| ||||||| Sbjct 3938 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 3997 Query 155359 TACTCTGCACCAGTATCTGCTGC 155381 || || || || || | ||||| Sbjct 3998 TATTCAGCTCCTGTTGCAGCTGC 4020 >seq455362 Length=6327 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| | || ||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 807 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 748 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTC 155177 |||| |||||| | || || ||||| || || || ||||| || |||||| ||| Sbjct 747 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTC 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580259113114960