Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq39735 170 5e-38 seq32757 145 2e-30 seq455362 93.3 1e-14 >seq39735 Length=4112 Score = 170 bits (188), Expect = 5e-38 Identities = 246/344 (72%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 40781 TTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTC 40840 ||| || || | || ||||| ||||| || || |||||||| ||||| || || | || Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925 Query 40841 CTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---T 40897 ||||| || | || || | || |||||| |||| ||||| |||| || | | Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865 Query 40898 TGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGC 40957 |||| || ||| | || ||||||||| || | | ||| ||||| || || || Sbjct 1864 AGAGGT--TACCAAAGAA-CCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGC 1808 Query 40958 AACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACAT 41017 || || ||||| || ||||||||||| || |||||||| || |||||||| |||| ||| Sbjct 1807 CACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCAT 1748 Query 41018 GAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAA 41077 ||||||||| || ||| |||||||| ||||||||| ||||| || || ||||| | Sbjct 1747 GAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAAT 1688 Query 41078 TGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTG 41121 ||| || | ||||| | ||| ||| |||| | ||||||| Sbjct 1687 TGGGTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTG 1644 >seq32757 Length=9777 Score = 145 bits (160), Expect = 2e-30 Identities = 228/323 (71%), Gaps = 4/323 (1%) Strand=Plus/Minus Query 41102 AGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTA 41161 ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || | | | Sbjct 4021 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAA 3962 Query 41162 TGAAAGTTCCCACTGTCTACCAGCGTAT-GCT-GCTACTCCTATTAAAAAGTGAAAGACA 41219 ||||||||||| | ||| | ||| || ||||| || | ||| ||||| | ||| Sbjct 3961 ACTAAGTTCCCACTCACGACC--CATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACA 3904 Query 41220 ATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATT 41279 || || | ||| || || |||||||||| ||| || || | | | |||||||| ||| Sbjct 3903 ATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATT 3844 Query 41280 GGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTG 41339 ||||| || || | || || || ||| | || | | || || || ||||||||| Sbjct 3843 GGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTG 3784 Query 41340 TTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGT 41399 || ||||| | ||| || || ||||| || ||||| || ||||| |||||||| || ||| Sbjct 3783 TTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGT 3724 Query 41400 GCTGCGATAAAGGCGATTATGAA 41422 || || || || || || || || Sbjct 3723 GCAGCAATGAAAGCAATAATAAA 3701 >seq455362 Length=6327 Score = 93.3 bits (102), Expect = 1e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 41322 GCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCA 41381 || || || ||||||||||| ||||| | ||| || || ||||| || ||||| || ||| Sbjct 707 GCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCA 766 Query 41382 TCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAG 41440 || |||||||| || ||||| || || || || || || || ||| | || || || | Sbjct 767 TCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGCGGTCAA 825 Query 41441 TAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTT 41488 ||| | || ||||| | |||| |||||| || | ||| || || || Sbjct 826 TAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACGCTT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142634210303844