Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq39735 246 3e-60 seq32757 178 1e-39 >seq39735 Length=4112 Score = 246 bits (272), Expect = 3e-60 Identities = 260/344 (76%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 ||||||||||| || || || || |||||||| || || || || || || ||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || ||||| ||||||| | || || || | || || ||||| ||||| | | | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACT 67790 || || || | |||||| ||||||||||| || || ||||| || |||||||| || || Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 67791 CCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAG 67850 || ||||| || |||||||||||||||||||||||||| |||||||| || | |||| || Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 67851 TTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGA 67910 || ||||||||||| || || |||||||| ||||||| || |||||||| | || Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 67911 TAGACCAAGAACACAGCNNNNGCTGCAGACACTGGAGCAGAGTA 67954 |||| |||||| | ||| || || | || ||||| || || Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 178 bits (196), Expect = 1e-39 Identities = 256/361 (71%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 67917 AAGAACACAGCNNNNGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGC 67976 ||| ||| ||| || || | || ||||| || ||||| ||| |||||||| ||| Sbjct 4035 AAGCACAGAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGC 3976 Query 67977 ATACCAAGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATA 68033 ||||| |||||| || ||||||||||| |||||| | || | ||| | || | Sbjct 3975 ATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCT---ACACCAAGT 3919 Query 68034 AGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTT 68093 | |||||| | || | || | |||| ||||| || || ||||| ||||| | || Sbjct 3918 AAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAA 3859 Query 68094 GCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCA 68153 || |||||||| || || || ||||| | ||| || || ||| |||| | || ||| Sbjct 3858 GCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCA 3799 Query 68154 CCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCG 68213 || ||||| || ||||| ||||| | | || || | ||||||||| | |||||||| Sbjct 3798 CCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCA 3739 Query 68214 ATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAG 68273 ||||| || |||||||| |||||||| ||||| || || || | ||||| ||| ||| Sbjct 3738 ATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATGAATGCGATGCTGAGAGGAAG 3679 Query 68274 C 68274 | Sbjct 3678 C 3678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562511079112560