Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 246 3e-60
seq32757 196 5e-45
seq455362 111 2e-19
>seq39735
Length=4112
Score = 246 bits (272), Expect = 3e-60
Identities = 261/344 (76%), Gaps = 0/344 (0%)
Strand=Plus/Minus
Query 68092 TGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCT 68151
|||||||||| || || || || ||||| || || || || || || || ||||| |||
Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924
Query 68152 TGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAA 68211
|||||||| ||||||| | || || ||| |||| |||||||| | | || |
Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864
Query 68212 GAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACG 68271
|| || |||| ||||||||||| |||||||| || || || |||||||| ||||| ||
Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804
Query 68272 CCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAG 68331
|| ||||| || || |||||||| |||||||||||||| |||||||| || | |||| ||
Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744
Query 68332 TTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGA 68391
|||||||||||||| || || |||||||| ||||||| || |||||||| | ||
Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684
Query 68392 TAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTA 68435
|||| || ||| | || | || ||||||||||| || || ||
Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640
>seq32757
Length=9777
Score = 196 bits (216), Expect = 5e-45
Identities = 232/312 (74%), Gaps = 2/312 (1%)
Strand=Plus/Minus
Query 68413 GCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAG 68472
|| ||||||||||| || || ||||||||| |||||||| |||||||| ||||| |
Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961
Query 68473 GAAAGTTCCCATTCACGTCCCATGTATGCAAAG-ATACCAATCAGGAAGTGAAAGATTAC 68531
||||||||| ||||| ||||| || |||| | ||||| | |||||| | | |
Sbjct 3960 CTAAGTTCCCACTCACGACCCATATA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAAT 3902
Query 68532 GAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGG 68591
|| | |||| ||||| ||||| ||||| ||||||| | || |||||||| || ||
Sbjct 3901 TAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGG 3842
Query 68592 ATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTT 68651
|||||||| | ||| || || ||| |||| | || ||||| ||||| || |||||
Sbjct 3841 GTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTT 3782
Query 68652 ACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGC 68711
|| || || | || |||| ||||||||||||||||||||| || || || || || ||
Sbjct 3781 TCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGC 3722
Query 68712 AGCGATGAAGGC 68723
||| ||||| ||
Sbjct 3721 AGCAATGAAAGC 3710
>seq455362
Length=6327
Score = 111 bits (122), Expect = 2e-19
Identities = 136/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACA 68676
||| |||| | || ||||| ||||| || ||||| || || || | || |||| ||||
Sbjct 692 GAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACA 751
Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735
||||||||||||||||| || || || || || ||||| ||||| || | || || |||
Sbjct 752 GGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA 811
Query 68736 GATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCG 68795
|| ||||| | | | ||||||||||||| || | ||||| |||| |||||| ||
Sbjct 812 GA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACG 870
Query 68796 GTT 68798
||
Sbjct 871 CTT 873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567578317443120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |