Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq39735 246 3e-60 seq32757 196 5e-45 seq455362 111 2e-19 >seq39735 Length=4112 Score = 246 bits (272), Expect = 3e-60 Identities = 261/344 (76%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 68092 TGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCT 68151 |||||||||| || || || || ||||| || || || || || || || ||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 68152 TGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAA 68211 |||||||| ||||||| | || || ||| |||| |||||||| | | || | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 68212 GAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACG 68271 || || |||| ||||||||||| |||||||| || || || |||||||| ||||| || Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 68272 CCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAG 68331 || ||||| || || |||||||| |||||||||||||| |||||||| || | |||| || Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 68332 TTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGA 68391 |||||||||||||| || || |||||||| ||||||| || |||||||| | || Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 68392 TAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTA 68435 |||| || ||| | || | || ||||||||||| || || || Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 196 bits (216), Expect = 5e-45 Identities = 232/312 (74%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 68413 GCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAG 68472 || ||||||||||| || || ||||||||| |||||||| |||||||| ||||| | Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961 Query 68473 GAAAGTTCCCATTCACGTCCCATGTATGCAAAG-ATACCAATCAGGAAGTGAAAGATTAC 68531 ||||||||| ||||| ||||| || |||| | ||||| | |||||| | | | Sbjct 3960 CTAAGTTCCCACTCACGACCCATATA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAAT 3902 Query 68532 GAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGG 68591 || | |||| ||||| ||||| ||||| ||||||| | || |||||||| || || Sbjct 3901 TAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGG 3842 Query 68592 ATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTT 68651 |||||||| | ||| || || ||| |||| | || ||||| ||||| || ||||| Sbjct 3841 GTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTT 3782 Query 68652 ACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGC 68711 || || || | || |||| ||||||||||||||||||||| || || || || || || Sbjct 3781 TCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGC 3722 Query 68712 AGCGATGAAGGC 68723 ||| ||||| || Sbjct 3721 AGCAATGAAAGC 3710 >seq455362 Length=6327 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACA 68676 ||| |||| | || ||||| ||||| || ||||| || || || | || |||| |||| Sbjct 692 GAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACA 751 Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735 ||||||||||||||||| || || || || || ||||| ||||| || | || || ||| Sbjct 752 GGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA 811 Query 68736 GATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCG 68795 || ||||| | | | ||||||||||||| || | ||||| |||| |||||| || Sbjct 812 GA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACG 870 Query 68796 GTT 68798 || Sbjct 871 CTT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567578317443120