Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq624305 105 1e-17 seq213125 102 1e-16 seq35568 102 1e-16 seq32509 100 5e-16 seq54869 87.8 3e-12 seq39135 84.2 4e-11 >seq624305 Length=475 Score = 105 bits (116), Expect = 1e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTA----GCCTCTTTAGAAATATTATA 193186 |||||||| | || ||||| |||| |||| ||| | ||| || ||||||||| Sbjct 344 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTACGTGGACTCCTTTTGAATATTATA 285 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| | | || || ||| || | || || || |||||||| || ||||| || || Sbjct 284 GTCTGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTC 225 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 || || || || || ||||| || || |||| ||| | ||| ||| ||||| ||| Sbjct 224 TGGGGGGATGCCCTCCTTATCCTGAATCTTGGCTTTCACATTGTCAATCGTATCCGAACT 165 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | ||||| || || ||||| || ||||| ||||| || ||||| Sbjct 164 CTCTACCTCCAACGTTATGGTCTTCCCTGTCAGAGTTTTGACAAAGATCTGCAT 111 >seq213125 Length=352 Score = 102 bits (112), Expect = 1e-16 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || || |||| |||| |||||| |||||||| ||| Sbjct 242 ACCACCACGGAGACGGAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATCGCC 183 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || |||| | ||| || || || ||||||||||| || || || || ||||| || || Sbjct 182 AAA-GTTCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTTTGCTGATCCGGCGG 124 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || |||||||| || |||| ||| | ||| ||| ||||| || ||| || Sbjct 123 GATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCAC 64 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || || || || || | || || ||||| || ||||| Sbjct 63 CTCCATAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 16 >seq35568 Length=7068 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || ||||| |||| |||| || | ||| || ||||||| Sbjct 3426 ATTTGCATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTA 3485 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | || || || |||||||| || ||||| || Sbjct 3486 TAGTCAGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGG 3545 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || ||||| | ||| | ||| ||| || || || Sbjct 3546 TCTGGGGGAATACCCTCCTTGTCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAG 3605 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| | ||| || ||||| || || || || || ||||| |||||||| Sbjct 3606 CTTTCCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 3661 >seq32509 Length=4583 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| |||| |||| || | ||| || |||||||||||| Sbjct 1435 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 1494 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || |||||||| || ||||| || || || Sbjct 1495 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 1554 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || ||||| | ||| | ||| || || || || || Sbjct 1555 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCC 1614 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || ||||| || || || || || ||||| |||||||| Sbjct 1615 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAGATTTGCAT 1664 >seq54869 Length=20101 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | | || || ||| || | || || || |||||||| || || Sbjct 4497 AATATTATAGTCTGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCT 4438 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || || || || || || ||||| || ||||| | ||| | ||| ||| || Sbjct 4437 CTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCAATGGT 4378 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || || ||||| | ||| || ||||| || || || || || ||||| ||||| Sbjct 4377 GTCAGAGCTTTCCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTG 4318 Query 193358 CAT 193360 ||| Sbjct 4317 CAT 4315 >seq39135 Length=3573 Score = 84.2 bits (92), Expect = 4e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| |||| |||| || | ||| || |||||||||||| Sbjct 223 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 164 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || |||||||| || ||||| || || || Sbjct 163 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 104 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || | ||||| || ||||| ||| | ||| ||| || || || || Sbjct 103 GGAATACCCCCCTTATCCTGAATTTTACCTTTCACATTATCAATGGTGTCAGAGCTTTCC 44 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351 ||||| | ||| || ||||| || || || || || ||||| Sbjct 43 ACTTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 892614986673120