Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq624305 105 1e-17
seq213125 102 1e-16
seq35568 102 1e-16
seq32509 100 5e-16
seq54869 87.8 3e-12
seq39135 84.2 4e-11
>seq624305
Length=475
Score = 105 bits (116), Expect = 1e-17
Identities = 164/234 (70%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTA----GCCTCTTTAGAAATATTATA 193186
|||||||| | || ||||| |||| |||| ||| | ||| || |||||||||
Sbjct 344 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTACGTGGACTCCTTTTGAATATTATA 285
Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246
||| | | || || ||| || | || || || |||||||| || ||||| || ||
Sbjct 284 GTCTGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTC 225
Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306
|| || || || || ||||| || || |||| ||| | ||| ||| ||||| |||
Sbjct 224 TGGGGGGATGCCCTCCTTATCCTGAATCTTGGCTTTCACATTGTCAATCGTATCCGAACT 165
Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || | ||||| || || ||||| || ||||| ||||| || |||||
Sbjct 164 CTCTACCTCCAACGTTATGGTCTTCCCTGTCAGAGTTTTGACAAAGATCTGCAT 111
>seq213125
Length=352
Score = 102 bits (112), Expect = 1e-16
Identities = 160/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | || || || || |||| |||| |||||| |||||||| |||
Sbjct 242 ACCACCACGGAGACGGAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATCGCC 183
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
|| |||| | ||| || || || ||||||||||| || || || || ||||| || ||
Sbjct 182 AAA-GTTCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTTTGCTGATCCGGCGG 124
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| || || |||||||| || |||| ||| | ||| ||| ||||| || ||| ||
Sbjct 123 GATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCAC 64
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| | ||| || || || || || | || || ||||| || |||||
Sbjct 63 CTCCATAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 16
>seq35568
Length=7068
Score = 102 bits (112), Expect = 1e-16
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | || ||||| |||| |||| || | ||| || |||||||
Sbjct 3426 ATTTGCATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTA 3485
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | | || || ||| || | || || || |||||||| || ||||| ||
Sbjct 3486 TAGTCAGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGG 3545
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || || || || || || ||||| | ||| | ||| ||| || || ||
Sbjct 3546 TCTGGGGGAATACCCTCCTTGTCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAG 3605
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| | ||| || ||||| || || || || || ||||| ||||||||
Sbjct 3606 CTTTCCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 3661
>seq32509
Length=4583
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | || ||||| |||| |||| || | ||| || ||||||||||||
Sbjct 1435 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 1494
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || || ||| || | || || || |||||||| || ||||| || || ||
Sbjct 1495 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 1554
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || ||||| || ||||| | ||| | ||| || || || || ||
Sbjct 1555 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCC 1614
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | ||| || ||||| || || || || || ||||| ||||||||
Sbjct 1615 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAGATTTGCAT 1664
>seq54869
Length=20101
Score = 87.8 bits (96), Expect = 3e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
|||||||||||| | | || || ||| || | || || || |||||||| || ||
Sbjct 4497 AATATTATAGTCTGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCT 4438
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
||| || || || || || || || ||||| || ||||| | ||| | ||| ||| ||
Sbjct 4437 CTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCAATGGT 4378
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|| || || ||||| | ||| || ||||| || || || || || ||||| |||||
Sbjct 4377 GTCAGAGCTTTCCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTG 4318
Query 193358 CAT 193360
|||
Sbjct 4317 CAT 4315
>seq39135
Length=3573
Score = 84.2 bits (92), Expect = 4e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | || ||||| |||| |||| || | ||| || ||||||||||||
Sbjct 223 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 164
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || || ||| || | || || || |||||||| || ||||| || || ||
Sbjct 163 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 104
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || | ||||| || ||||| ||| | ||| ||| || || || ||
Sbjct 103 GGAATACCCCCCTTATCCTGAATTTTACCTTTCACATTATCAATGGTGTCAGAGCTTTCC 44
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351
||||| | ||| || ||||| || || || || || |||||
Sbjct 43 ACTTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAA 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 892614986673120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |