Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq32509 107 3e-18 seq54869 105 1e-17 seq51887 98.7 1e-15 seq35568 98.7 1e-15 seq624305 96.9 5e-15 seq476667 96.9 5e-15 seq581596 93.3 6e-14 seq418407 93.3 6e-14 seq42417 93.3 6e-14 seq39135 91.5 2e-13 seq610020 89.7 7e-13 seq540191 87.8 3e-12 seq526479 87.8 3e-12 >seq32509 Length=4583 Score = 107 bits (118), Expect = 3e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||| || || || ||||| ||| ||| Sbjct 1664 ATGCAAATCTTTGTCAAGACCCTTACTGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 1605 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| || ||||| || || || || ||||| || Sbjct 1604 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 1545 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | |||| |||||| Sbjct 1544 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 1485 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || || || ||| Sbjct 1484 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 1455 >seq54869 Length=20101 Score = 105 bits (116), Expect = 1e-17 Identities = 138/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || || ||||| ||| ||| Sbjct 4315 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 4374 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| |||||| || ||||| || || || || ||||| || Sbjct 4375 GACACCATTGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 4434 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | |||| |||||| Sbjct 4435 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 4494 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 4495 AT-TCAAAAG 4503 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 4629 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 4688 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || || || || || ||||| || || || || Sbjct 4689 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 4748 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | || || ||||||||||| ||| || ||| | ||||||| || Sbjct 4749 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 4808 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 4809 ATTCAGAAGGAGTCCACCCTTCA 4831 >seq51887 Length=16442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| | Sbjct 8380 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 8321 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| |||||| | ||||||| | | ||||||| ||| | || ||||| ||| Sbjct 8320 GAAGATGGAAGAACTCTTGCAGATTACA--ACATCCAAAAGGAGTCAACTCTTCACCTAG 8263 Query 156031 TGTTAAG 156037 | ||||| Sbjct 8262 TTTTAAG 8256 >seq35568 Length=7068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || || ||||| ||| ||| Sbjct 3661 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 3602 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| |||||| || || || || || || || ||||| || Sbjct 3601 GACACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 3542 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | | || |||||| Sbjct 3541 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAAT 3482 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || || || ||| Sbjct 3481 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 3452 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 3433 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 3374 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || || || || || ||||| || || || || Sbjct 3373 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 3314 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | || || ||||||||||| ||| || ||| | ||||||| || Sbjct 3313 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3254 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 3253 ATTCAGAAGGAGTCCACCCTTCA 3231 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||| || || || || | || || ||| ||| Sbjct 4172 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 4113 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| ||||| || |||||||| ||||| || || Sbjct 4112 GACACCATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCGGACCAG 4053 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||||| ||| ||||||||||| || ||| Sbjct 4052 CAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGAT 4017 >seq624305 Length=475 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||| || || || || || || || || || ||| Sbjct 111 ATGCAGATCTTTGTCAAAACTCTGACAGGGAAGACCATAACGTTGGAGGTAGAGAGTTCG 170 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || ||||| || ||||| || ||||| || Sbjct 171 GATACGATTGACAATGTGAAAGCCAAGATTCAGGATAAGGAGGGCATCCCCCCAGACCAG 230 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | |||| |||||| Sbjct 231 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 290 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 291 AT-TCAAAAG 299 >seq476667 Length=529 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||||||||| || ||||| ||| || Sbjct 304 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 363 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || | || || ||||||||||| || ||||| || Sbjct 364 AGACACAATTGATAATGTCAAGGCGAAGGTTCAGGACAAAGAAGGCATTCCCCCAGACCA 423 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || ||||||||||| ||| || || | ||||||| || Sbjct 424 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACAA 483 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || || ||||| ||| Sbjct 484 CATACAGAAGGAGTCAACTCTGCATTTGGTG 514 >seq581596 Length=910 Score = 93.3 bits (102), Expect = 6e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||||||||| || ||||| ||| || Sbjct 418 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 359 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || | || || || || || ||||||||||| | ||||| || Sbjct 358 AGACACAATTGATAATATCAAGGCAAAGATTCAGGACAAAGAAGGCATTTCCCCAGACCA 299 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || ||||||||||| || || || | |||||||| || Sbjct 298 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGACGGTAGGACACTGTCAGATTACAA 239 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || || ||||| ||| Sbjct 238 CATACAGAAGGAGTCAACTCTGCATTTGGTG 208 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || |||| Sbjct 189 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 130 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || || ||| | |||||||| || Sbjct 129 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCTTTCCTCCAGACCAG 70 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| | ||| || ||||||| || Sbjct 69 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGTCGGACTCTAGCAGATTACAAC 10 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 9 AT-TCAAAAG 1 >seq418407 Length=782 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| || || || || |||| || ||| ||| Sbjct 254 ATGCAGATCTTCGTTAAGACTCTCACTGGTAAGACCATCACCCTAGAGGTTGAAAGCTCT 313 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| |||||||| |||||||| || ||||| || Sbjct 314 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 373 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| |||||| ||| || ||||||||||| ||| Sbjct 374 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGAT 409 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||| || || || || || || |||| Sbjct 489 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 548 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || |||||||| || || || ||||| || Sbjct 549 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 608 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||||| || ||| | || | | ||||| || Sbjct 609 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCACACCCTGGCTGATTACAAC 668 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGT 156031 || || |||| || | || ||||||||||| Sbjct 669 AT-TCAAAAGGAGTCCACCCTTCATTTAGT 697 >seq42417 Length=17167 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| |||| || ||||| |||||||||| |||||||||||| | Sbjct 2810 CAGGATAAGGAAGGCATCACTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 2751 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| |||||| | ||||||| | | ||||||| ||| | || ||||| ||| Sbjct 2750 GAAGATGGAAGAACTCTTGCAGATTACA--ACATCCAAAAGGAGTCAACTCTTCACCTAG 2693 Query 156031 TGTTAAG 156037 | ||||| Sbjct 2692 TTTTAAG 2686 >seq39135 Length=3573 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 || || ||||| || || || ||||| ||| ||||| | ||| || |||||| | Sbjct 18 ACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCTGACACCATTGATAATGTGAAAGGT 77 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| || ||||| | || || || ||||| || || || ||||||| ||| |||||| Sbjct 78 AAAATTCAGGATAAGGGGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCAGGTAAG 137 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCA 156025 ||||| || ||| || || | |||| |||||||| || ||| ||| | || || || Sbjct 138 CAGCTTGAGGATGGAAGGACACTTGCAGACTATAATAT-TCAAAAGGAGTCCACTCTGCA 196 Query 156026 TTTAGTG 156032 || ||| Sbjct 197 CTTGGTG 203 >seq610020 Length=13068 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| |||||||| || || ||| |||||| ||| ||||||||| | Sbjct 6435 CAGGATAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTG 6376 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||||| |||| | ||||||||||||| |||||| | || || || | ||| Sbjct 6375 GAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTG 6316 Query 156033 TTAAGATTAAGAGGCGG 156049 || || || || || || Sbjct 6315 TTGAGGTTGAGGGGAGG 6299 >seq540191 Length=2323 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| || || || || | || || ||| ||| Sbjct 276 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 217 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| |||||||| |||||||| || ||||| || Sbjct 216 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 157 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| |||||| ||| || ||||||||||| ||| Sbjct 156 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGAT 121 >seq526479 Length=2113 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| |||||||| || || |||||||||| ||| ||||||||| | Sbjct 2002 CAGGATAAGGAAGGCATCCCTCCAGATCAGCAGAGATTGATTTTTGCTGGTAAGCAGTTG 2061 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAG 156014 |||||| |||| | ||||||||| ||||||||| || Sbjct 2062 GAAGATGGTCGAACCCTTGCAGATTATA--ATATCCAAAAAG 2101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 726145412645600