Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq213125 105 1e-17 seq51887 96.9 7e-15 seq42417 91.5 3e-13 seq526479 87.8 4e-12 seq518350 84.2 4e-11 >seq213125 Length=352 Score = 105 bits (116), Expect = 1e-17 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| |||||| |||||||||||| | Sbjct 242 ACCACCACGGAGACGGAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATC-GC 184 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| |||| ||||| || || || |||||||| || || || ||||| || || Sbjct 183 CAAAGTTCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTTTGCTGATCCGGCGG 124 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| || || ||| ||||| || | ||| || || || Sbjct 123 GATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCAC 64 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| ||||| || ||||| || || || | ||| |||||||| Sbjct 63 CTCCATAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 16 >seq51887 Length=16442 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| || || | ||| |||| || | ||| | ||| || ||| || ||| Sbjct 8238 ATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAA 8297 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | |||| | |||| |||||||| ||||| ||||| || ||||||||||||||| Sbjct 8298 TCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCA 8357 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || || || ||||| ||||| || Sbjct 8358 GGAGGGATGCCTTCCTTATCCTG 8380 >seq42417 Length=17167 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| || || | ||| |||| || | ||| | ||| || ||| || ||| Sbjct 2668 ATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAA 2727 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | |||| | |||| |||||||| ||||| ||||| || ||||||||||||||| Sbjct 2728 TCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCA 2787 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || | || ||||| ||||| || Sbjct 2788 GGAGTGATGCCTTCCTTATCCTG 2810 >seq526479 Length=2113 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 ||| | |||||| |||||||||||| | | ||||| |||| ||||| || ||||| Sbjct 2109 AGTTGACTCTTTTTGGATATTATAATCTGCAAGGGTTCGACCATCTTCCAACTGCTTACC 2050 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||||| || |||||||| ||||| || || || ||||| ||||| || Sbjct 2049 AGCAAAAATCAATCTCTGCTGATCTGGAGGGATGCCTTCCTTATCCTG 2002 >seq518350 Length=4758 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| |||||||||||| | || || || |||| ||||| || || || || || Sbjct 3168 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 3109 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| || || || ||||| || || || || || |||||||| || || ||| ||||| Sbjct 3108 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGGTTTGACATT 3049 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT-TAATGTTTTAA 192523 || | ||| || ||||| || || || ||||| || | ||| || || || | Sbjct 3048 GTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCAAGTCAAAAGTCTTCA 2989 Query 192524 TAAATATCTGCAT 192536 ||| | |||||| Sbjct 2988 CAAAAACCTGCAT 2976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 976584283964100