Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq418407 96.9 6e-15 seq32509 96.9 6e-15 seq51887 95.1 2e-14 seq42417 91.5 3e-13 seq540191 87.8 3e-12 seq35568 87.8 3e-12 >seq418407 Length=782 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | ||| || ||||| || || || ||||| |||||||| ||| Sbjct 399 TGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATT 340 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || || || ||| || ||||| || ||||| |||||| Sbjct 339 TTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCAACCTCTAGGGTGATGGTCTTACCA 280 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| ||| |||||||| Sbjct 279 GTGAGAGTCTTAACGAAGATCTGCAT 254 >seq32509 Length=4583 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||||||||| | ||| || ||||| || || || ||||| |||||||| ||| Sbjct 1979 TGTTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATT 2038 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || || || |||| || || || || ||||| || ||| Sbjct 2039 TTGGCTTTGACATTGTCAATGGTGTCAGAGCATTCAACCTCAAGGGTGATGGTCTTGCCA 2098 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| ||| |||||||| Sbjct 2099 GTGAGAGTCTTAACGAAGATCTGCAT 2124 >seq51887 Length=16442 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| || || | ||| |||| || | ||| | ||| || || || | Sbjct 8236 TCATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGT 8295 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || || | | || |||||||| ||||| |||||||| ||||||||||| | Sbjct 8296 AATCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGAT 8355 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 8356 CAGGAGGGATGCCTTCCTTATCCTG 8380 >seq42417 Length=17167 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| || || | ||| |||| || | ||| | ||| || || || | Sbjct 2666 TCATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGT 2725 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || || | | || |||||||| ||||| |||||||| ||||||||||| | Sbjct 2726 AATCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGAT 2785 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| | || ||||| ||||| || Sbjct 2786 CAGGAGTGATGCCTTCCTTATCCTG 2810 >seq540191 Length=2323 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | ||| || ||||| || || || ||||| |||||||| ||| Sbjct 131 TGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATT 190 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || || || ||| || || || || ||||| || ||| Sbjct 191 TTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCA 250 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| ||| |||||||| Sbjct 251 GTGAGAGTCTTAACGAAGATCTGCAT 276 >seq35568 Length=7068 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| || || || ||||| || || || ||||| || ||||| ||| Sbjct 4027 TGCTTACCAGCAAAAATCAACCTTTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATT 4086 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| |||||| || || || || ||| || || || || ||||| || ||| Sbjct 4087 TTGGCTTTGACATTATCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCA 4146 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||| |||||||| Sbjct 4147 GTGAGAGTCTTGACGAAGATCTGCAT 4172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898053695482800