Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq207977 123 7e-23 seq37849 113 1e-19 seq20476 95.1 4e-14 >seq207977 Length=356 Score = 123 bits (136), Expect = 7e-23 Identities = 215/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | | | | ||| ||||| ||||| |||||| || Sbjct 345 CATAATATCCTCCATAGCCTTCACCAGTCTCCTCTGGATATACCCAGTCTCAGATGTCTT 286 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || ||||| || ||||| | | ||| ||||||||||| ||||| | ||| | || Sbjct 285 GACTGCAGTATCTATAAGACCTTCCCTACCTCCCATAGCATGAAAGAAGAACTCCTGTGG 226 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||| |||| || | || | || || |||||||| || || || |||| Sbjct 225 AGTTAGTCCCCGAAGGTATGAATTTTCTACAAAACCACGACTTTCTGGTCCATAGTCGTC 166 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| || ||||| |||| || | || | || |||||||| || || || ||||| Sbjct 165 CTTAGTGAAGTGGGGCAAAGTACGGTCAATGAACCCATATGGGATTCGTTTACCCTCAAC 106 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||||||||||| || | | ||||||| || || || | | ||| ||||| || || Sbjct 105 ATTCTGCTGTCCCACACAAGCAGTCATCTGTGATATGTTGATAAAACTTCCCTTAGATCC 46 Query 302865 AGCATTTACCATA 302877 || | |||||| Sbjct 45 GGCTGTAACCATA 33 >seq37849 Length=6260 Score = 113 bits (124), Expect = 1e-19 Identities = 282/422 (67%), Gaps = 16/422 (4%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| || ||||| |||||||| | |||| ||| | | || ||| |||||| Sbjct 3976 ATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAAACCATCC 3917 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || ||| |||| |||||||| || ||||| ||||||||||| |||| || Sbjct 3916 ATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTG---CCTC------CA 3866 Query 289009 CCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||||||| |||| || | | || Sbjct 3865 CCA-ATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 3807 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 || | ||||| | || | ||| | || | || || || || |||| |||||| Sbjct 3806 AGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 3747 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | ||||||| ||||| |||||| | || | | || | || | ||| ||||| || | Sbjct 3746 AAACATTTCAACAAACTCAGAACCTGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAG 3688 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | |||| |||| || || ||||| || ||||| || || || | | ||||| || | Sbjct 3687 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCCTT 3628 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | || ||||||| ||||||| || || || | || Sbjct 3627 TAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCACTT 3568 Query 289304 CC 289305 || Sbjct 3567 CC 3566 >seq20476 Length=2183 Score = 95.1 bits (104), Expect = 4e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| |||| Sbjct 1855 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 1914 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960 || |||| ||||||| |||||| || |||| ||||| Sbjct 1915 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 1951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1460013344122542