Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq207977 123 7e-23
seq37849 113 1e-19
seq20476 95.1 4e-14
>seq207977
Length=356
Score = 123 bits (136), Expect = 7e-23
Identities = 215/313 (69%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
|||||| || |||||| ||| | | | | ||| ||||| ||||| |||||| ||
Sbjct 345 CATAATATCCTCCATAGCCTTCACCAGTCTCCTCTGGATATACCCAGTCTCAGATGTCTT 286
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
|| || ||||| || ||||| | | ||| ||||||||||| ||||| | ||| | ||
Sbjct 285 GACTGCAGTATCTATAAGACCTTCCCTACCTCCCATAGCATGAAAGAAGAACTCCTGTGG 226
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
||| |||| || | || | || || |||||||| || || || ||||
Sbjct 225 AGTTAGTCCCCGAAGGTATGAATTTTCTACAAAACCACGACTTTCTGGTCCATAGTCGTC 166
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||| || ||||| |||| || | || | || |||||||| || || || |||||
Sbjct 165 CTTAGTGAAGTGGGGCAAAGTACGGTCAATGAACCCATATGGGATTCGTTTACCCTCAAC 106
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
||||||||||||| || | | ||||||| || || || | | ||| ||||| || ||
Sbjct 105 ATTCTGCTGTCCCACACAAGCAGTCATCTGTGATATGTTGATAAAACTTCCCTTAGATCC 46
Query 302865 AGCATTTACCATA 302877
|| | ||||||
Sbjct 45 GGCTGTAACCATA 33
>seq37849
Length=6260
Score = 113 bits (124), Expect = 1e-19
Identities = 282/422 (67%), Gaps = 16/422 (4%)
Strand=Plus/Minus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948
||||| || ||||| |||||||| | |||| ||| | | || ||| ||||||
Sbjct 3976 ATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAAACCATCC 3917
Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008
|| ||| |||| |||||||| || ||||| ||||||||||| |||| ||
Sbjct 3916 ATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTG---CCTC------CA 3866
Query 289009 CCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064
|| | || | |||| ||| ||||||||||||||||| |||| || | | ||
Sbjct 3865 CCA-ATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 3807
Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124
|| | ||||| | || | ||| | || | || || || || |||| ||||||
Sbjct 3806 AGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 3747
Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183
| ||||||| ||||| |||||| | || | | || | || | ||| ||||| || |
Sbjct 3746 AAACATTTCAACAAACTCAGAACCTGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAG 3688
Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243
| | |||| |||| || || ||||| || ||||| || || || | | ||||| || |
Sbjct 3687 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCCTT 3628
Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303
| || | || ||| ||| | || ||||||| ||||||| || || || | ||
Sbjct 3627 TAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCACTT 3568
Query 289304 CC 289305
||
Sbjct 3567 CC 3566
>seq20476
Length=2183
Score = 95.1 bits (104), Expect = 4e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923
||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| ||||
Sbjct 1855 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 1914
Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960
|| |||| ||||||| |||||| || |||| |||||
Sbjct 1915 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 1951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1460013344122542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |