Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 239 5e-58
seq32757 152 6e-32
seq59901 91.5 2e-13
>seq39735
Length=4112
Score = 239 bits (264), Expect = 5e-58
Identities = 262/346 (76%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 157970 TATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGT 158029
||||| ||||| || || || || ||||| | ||| | |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 158030 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTC 158089
|| || || | ||||||||| || |||||||||||||| |||| |||| ||||||||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 158090 CAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 158149
||||| || |||||||||||||||||||| || || ||||| ||||| ||||| |||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 158150 GGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGA 158208
|| || || || ||| ||||||||| || | | || || | || | | || | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878
Query 158209 AACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTA 158268
||| || |||| || || || | ||||||| ||||||||||||||||| |||||
Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938
Query 158269 TAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 158314
||| ||||| || || ||||| || || || || ||||||||||||
Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 152 bits (168), Expect = 6e-32
Identities = 228/320 (71%), Gaps = 4/320 (1%)
Strand=Plus/Plus
Query 157682 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 157741
|| ||| | ||||| || || || || || || || || |||||||| || |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 157742 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 157801
| | || || ||||| || || || ||||| || | || |||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 157802 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 157861
| ||||| || || || |||||||| || || ||||||| ||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 157862 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGTG 157919
|||| | || | || | |||||| | ||||| | || ||| || ||||| ||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947
Query 157920 AGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTC 157979
||||||||||| | |||| | ||||||||||| ||||| ||| |||||||| ||||
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 157980 CAGTCGCTGCAGCATCTGCT 157999
| || || || || |||||
Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027
>seq59901
Length=2371
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809
|||||||| ||||| || || || || || | || | |||||||||||| || |||
Sbjct 2050 TACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTCCCTTACTCTTGTCGCGCCGGT 2109
Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAG-TC 158868
| |||||||| || || || || |||| ||| || || || ||| ||| ||| |
Sbjct 2110 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 2169
Query 158869 GTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAAC 158928
||||| || ||||| ||||||| | || ||||| || || ||||| || ||||| |
Sbjct 2170 TTTCTT-GATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCTTC 2228
Query 158929 ATCTGAT 158935
||||||
Sbjct 2229 CTCTGAT 2235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544083603379120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |