Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq39735 230 3e-55 seq32757 214 2e-50 seq572135 104 3e-17 seq12963 102 9e-17 seq59901 89.7 6e-13 seq439774 84.2 2e-11 >seq39735 Length=4112 Score = 230 bits (254), Expect = 3e-55 Identities = 258/345 (75%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 151229 TACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGT 151288 || || ||||| ||||| ||||| | ||| | ||| | |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 151289 TCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTC 151348 || ||||| | ||||| || || || ||||| || ||||||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 151349 CAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTC 151408 ||||| ||||||||||| || |||||||| || || ||||| |||||||||||||| || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 151409 GGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAG 151468 || || || || ||| || ||||| |||||| |||| || ||| || | | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 151469 ACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTAC 151528 ||||| ||||| || || || | ||||||| ||||||||||| ||||| ||||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 151529 AACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAA 151573 || ||||| ||||| || ||||| ||||| || | ||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 214 bits (236), Expect = 2e-50 Identities = 243/320 (76%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 || ||||| ||||| || || || || || ||||| || |||||||| ||| |||| ||| Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 | | ||||| ||||| || || || ||||| || | ||| ||||| ||||| ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 ||||||| || || || |||||||| || ||| | ||||||||| | ||||||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTG--GTATCTATGCTTACATGGGTCGTG 151178 |||| | || |||| | |||||| | ||| ||| || ||| || |||||||||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947 Query 151179 AGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCT 151237 |||||||||| || ||| |||||||||| || ||||| ||| |||||||| || ||| Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCT 4006 Query 151238 CCAGTTGCTGCTGCGAGTGC 151257 || ||||| ||||| | ||| Sbjct 4007 CCTGTTGCAGCTGCTACTGC 4026 >seq572135 Length=2283 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||||||| |||||||||||| | |||||| | ||||||||| || ||| ||||| Sbjct 1798 AGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 1739 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | ||||| ||||| ||| | ||||| || ||||| || ||| ||||||| ||| Sbjct 1738 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTC 1679 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGT-GCTGACCTGTGTTG 152172 ||| || ||| | ||||| |||| || ||| ||| || | |||||||||||| Sbjct 1678 TGATGGTTCCTTCCTTGATGACAACCAAAT-GAAGGAGGGTTATTTGCTGACCTGTGTCT 1620 Query 152173 CATATCCAACTTCTGA 152188 |||| ||| |||| || Sbjct 1619 CATACCCATCTTCAGA 1604 >seq12963 Length=2429 Score = 102 bits (112), Expect = 9e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054 |||||| |||||||||||| | |||||| | ||||||||| || ||| ||||| Sbjct 550 GATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGC 491 Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114 | ||||| ||||| ||| | ||||| || ||||| || ||| ||||||| ||| | Sbjct 490 AGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCT 431 Query 152115 GACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGT-GCTGACCTGTGTTGC 152173 || || ||| | ||||| |||| || ||| ||| || | |||||||||||| | Sbjct 430 GATGGTTCCTTCCTTGATGACAACCAAAT-GAAGGAGGGTTATTTGCTGACCTGTGTCTC 372 Query 152174 ATATCCAACTTCTGA 152188 ||| ||| |||| || Sbjct 371 ATACCCATCTTCAGA 357 >seq59901 Length=2371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 ||||||||||| || ||| | || || || || || || ||| |||| ||| || || Sbjct 2092 TACTCTTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 2151 Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164 || ||| |||||| | | ||||| ||||||||||||||||| || || || || || Sbjct 2152 GACCAGTCTGACCAGAGCTTTCTT-GATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 2210 Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197 ||||| || ||||| | |||||||| || || Sbjct 2211 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 2243 >seq439774 Length=2317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 ||||| ||||| || ||| | || || || || || || ||| |||| ||| || || Sbjct 1415 TACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 1474 Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164 || ||| |||||| | | |||||| |||||||||||||||| || || || || || Sbjct 1475 GACCAGTCTGACCAGAGCTTTCTTG-ATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 1533 Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197 ||||| || ||||| | |||||||| || || Sbjct 1534 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 1566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545321838309520