Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 230 3e-55
seq32757 214 2e-50
seq572135 104 3e-17
seq12963 102 9e-17
seq59901 89.7 6e-13
seq439774 84.2 2e-11
>seq39735
Length=4112
Score = 230 bits (254), Expect = 3e-55
Identities = 258/345 (75%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 151229 TACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGT 151288
|| || ||||| ||||| ||||| | ||| | ||| | |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 151289 TCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTC 151348
|| ||||| | ||||| || || || ||||| || ||||||| |||| |||| |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 151349 CAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTC 151408
||||| ||||||||||| || |||||||| || || ||||| |||||||||||||| ||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 151409 GGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAG 151468
|| || || || ||| || ||||| |||||| |||| || ||| || | | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 151469 ACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTAC 151528
||||| ||||| || || || | ||||||| ||||||||||| ||||| |||||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 151529 AACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAA 151573
|| ||||| ||||| || ||||| ||||| || | |||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 214 bits (236), Expect = 2e-50
Identities = 243/320 (76%), Gaps = 6/320 (2%)
Strand=Plus/Plus
Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000
|| ||||| ||||| || || || || || ||||| || |||||||| ||| |||| |||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060
| | ||||| ||||| || || || ||||| || | ||| ||||| ||||| |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120
||||||| || || || |||||||| || ||| | ||||||||| | |||||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTG--GTATCTATGCTTACATGGGTCGTG 151178
|||| | || |||| | |||||| | ||| ||| || ||| || ||||||||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947
Query 151179 AGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCT 151237
|||||||||| || ||| |||||||||| || ||||| ||| |||||||| || |||
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCT 4006
Query 151238 CCAGTTGCTGCTGCGAGTGC 151257
|| ||||| ||||| | |||
Sbjct 4007 CCTGTTGCAGCTGCTACTGC 4026
>seq572135
Length=2283
Score = 104 bits (114), Expect = 3e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053
||||||| |||||||||||| | |||||| | ||||||||| || ||| |||||
Sbjct 1798 AGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 1739
Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113
| ||||| ||||| ||| | ||||| || ||||| || ||| ||||||| |||
Sbjct 1738 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTC 1679
Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGT-GCTGACCTGTGTTG 152172
||| || ||| | ||||| |||| || ||| ||| || | ||||||||||||
Sbjct 1678 TGATGGTTCCTTCCTTGATGACAACCAAAT-GAAGGAGGGTTATTTGCTGACCTGTGTCT 1620
Query 152173 CATATCCAACTTCTGA 152188
|||| ||| |||| ||
Sbjct 1619 CATACCCATCTTCAGA 1604
>seq12963
Length=2429
Score = 102 bits (112), Expect = 9e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054
|||||| |||||||||||| | |||||| | ||||||||| || ||| |||||
Sbjct 550 GATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGC 491
Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114
| ||||| ||||| ||| | ||||| || ||||| || ||| ||||||| ||| |
Sbjct 490 AGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCT 431
Query 152115 GACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGT-GCTGACCTGTGTTGC 152173
|| || ||| | ||||| |||| || ||| ||| || | |||||||||||| |
Sbjct 430 GATGGTTCCTTCCTTGATGACAACCAAAT-GAAGGAGGGTTATTTGCTGACCTGTGTCTC 372
Query 152174 ATATCCAACTTCTGA 152188
||| ||| |||| ||
Sbjct 371 ATACCCATCTTCAGA 357
>seq59901
Length=2371
Score = 89.7 bits (98), Expect = 6e-13
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105
||||||||||| || ||| | || || || || || || ||| |||| ||| || ||
Sbjct 2092 TACTCTTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 2151
Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164
|| ||| |||||| | | ||||| ||||||||||||||||| || || || || ||
Sbjct 2152 GACCAGTCTGACCAGAGCTTTCTT-GATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 2210
Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197
||||| || ||||| | |||||||| || ||
Sbjct 2211 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 2243
>seq439774
Length=2317
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105
||||| ||||| || ||| | || || || || || || ||| |||| ||| || ||
Sbjct 1415 TACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 1474
Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164
|| ||| |||||| | | |||||| |||||||||||||||| || || || || ||
Sbjct 1475 GACCAGTCTGACCAGAGCTTTCTTG-ATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 1533
Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197
||||| || ||||| | |||||||| || ||
Sbjct 1534 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 1566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545321838309520
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