Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq39735 192 7e-44 >seq39735 Length=4112 Score = 192 bits (212), Expect = 7e-44 Identities = 249/344 (72%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 72625 TACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGT 72684 || ||||| ||||| | || || ||| | ||| | | || ||| | ||||| || Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 72685 TCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTC 72744 || ||||| |||||||| ||||| ||||| ||||| |||||||||||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 72745 CAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTC 72804 ||||| || |||||||| || |||||||| || || ||| |||||| || ||| | || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 72805 GGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAG 72864 || ||| || |||||||| ||||| ||||| | || || || | | ||||| || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 72865 ACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATAT 72924 || ||||| || || | || | || || | ||||| ||||| |||||||| ||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 72925 AACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCA 72968 || || || || |||||||| || || || |||| |||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568391107551280