Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq620679 223 4e-52 seq206112 114 2e-19 seq41365 98.7 1e-14 seq251042 91.5 2e-12 seq85085 91.5 2e-12 seq608174 87.8 2e-11 seq495668 87.8 2e-11 seq367408 87.8 2e-11 seq13755 87.8 2e-11 >seq620679 Length=2600 Score = 223 bits (246), Expect = 4e-52 Identities = 228/295 (77%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||||| ||||| | | |||| | || ||| Sbjct 2053 GAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGG 2112 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| || |||||| |||||||||||| ||||||||| Sbjct 2113 ACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 2172 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| ||||| |||| || | | || | |||||||| || Sbjct 2173 AAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGG-CG 2231 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| | ||| || ||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 2232 CTGGTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTA 2291 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||||||||| | | | |||| | || ||||| | | || |||| |||||| Sbjct 2292 CATCTCCCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTTG 2346 >seq206112 Length=358 Score = 114 bits (126), Expect = 2e-19 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || || ||||||||||| || | | || Sbjct 166 GCTTGGCCAATTCACCGGGCAGGAGGAGACGGACAGCAGTCTGGATCTCCCGGGAGGTGA 107 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| ||||||||| |||| |||||| | | |||| | |||| | Sbjct 106 TGGTGGAGCGCTTGTTGTAGTGCGCCAAGCGGCTGGCCTCAGCGGCGATCCTCTCGAAGA 47 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGAT 1254508 ||||||| || || |||||||||| ||||| | |||| |||||| Sbjct 46 TGTCGTTCACGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGAT 1 >seq41365 Length=4553 Score = 98.7 bits (108), Expect = 1e-14 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194 ||||| || || | ||||||||||| | ||| ||||| |||| | || |||||| Sbjct 4383 GACAAAGATTTCGTCAACGTCGAGCAGGACCTCCTGTTTGATCTGATATTGGCAGCCAAC 4442 Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTG-GGTGCAAGTCTGTGGCCAACATGATCAA 1592253 || || ||||| | ||||| || |||| ||| || ||||||| |||||||||| Sbjct 4443 TATCTAAACATCGCGGGGCTGCTGGA-CTTGACATGCCAGGCTGTGGCGGACATGATCAA 4501 Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||| ||| | ||||| |||| |||||||| || ||||||||| Sbjct 4502 GGGAAAGACTCCCGAACAGATTCGCAAGACTTTCAACATCAAG 4544 >seq251042 Length=327 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1254434 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACAT 1254493 || |||||| | | |||| | |||| |||||||| || || |||||||||| ||||| Sbjct 1 GCTGGCCTCAGCGGCGATCCTCTCGAAGATGTCGTTCACGAAGGAGTTCATGATGGACAT 60 Query 1254494 CGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| |||||| || |||||||||||| ||||| || || ||||||||| Sbjct 61 GGCCTTGGAGGAGATACCGGTGTCGGGGTGCACTTGCTTAAGTACTTTGTAGATG 115 >seq85085 Length=670 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1254434 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACAT 1254493 || |||||| | | |||| | |||| |||||||| || || |||||||||| ||||| Sbjct 1 GCTGGCCTCAGCGGCGATCCTCTCGAAGATGTCGTTCACGAAGGAGTTCATGATGGACAT 60 Query 1254494 CGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| |||||| || |||||||||||| ||||| || || ||||||||| Sbjct 61 GGCCTTGGAGGAGATTCCGGTGTCGGGGTGCACTTGCTTAAGAACTTTGTAGATG 115 >seq608174 Length=5873 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| || || ||||| ||| || |||||||| || Sbjct 1541 GCTGCTAACTATCTGAACATCAAGGGCCTTCTGGATCTGACTTGCCAGACTGTGGCCGAC 1600 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || || |||||||||||||| || ||||| ||| Sbjct 1601 ATGATCAAGGGGAAGACTCCAGAAGAGATCCGCAAGACTTTCAACATTAAG 1651 >seq495668 Length=842 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| || || || |||| Sbjct 281 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTACTGGA-CTTGAC 339 Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 ||| || ||||||| ||||||||||||| ||| | ||||| ||||| ||| |||| || Sbjct 340 ATGCCAGACTGTGGCAGACATGATCAAGGGAAAGACTCCCGAAGAGATTCGCCAGACTTT 399 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 400 CAACATCAAG 409 >seq367408 Length=502 Score = 87.8 bits (96), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 869824 GAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATAC 869883 ||| || ||||||||||||||||||| ||| ||||||||||| |||||||||||||| | Sbjct 496 GAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTCCCAGAT 437 Query 869884 TTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 | | |||| | || ||||| | | || |||| |||||| Sbjct 436 CTCCGGGTATTGAATCGGGAACATGCAGAACCGGTCCGGGTTG 394 >seq13755 Length=2362 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| || || || |||| Sbjct 134 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTACTGGA-CTTGAC 192 Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 ||| || ||||||| ||||||||||||| ||| | ||||| ||||| ||| |||| || Sbjct 193 ATGCCAGACTGTGGCAGACATGATCAAGGGAAAGACTCCCGAAGAGATTCGCCAGACTTT 252 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 253 CAACATCAAG 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6055769498641222