Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq581596 96.9 3e-15
seq476667 93.3 3e-14
seq25161 93.3 3e-14
seq54869 89.7 4e-13
seq35568 89.7 4e-13
seq36855 87.8 1e-12
seq624305 82.4 6e-11
seq212778 82.4 6e-11
>seq581596
Length=910
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425
||||| || || | ||| ||||| || || || || | ||| ||||||||| |||||
Sbjct 552 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 493
Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485
|||| ||||| | || ||||||||||||||||| ||||| || |||||| |||| |
Sbjct 492 GATGGAAGAACTCTTGCAGATTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTC 433
Query 110486 AGACTGCGAGGGGGAA 110501
| ||||| || ||||
Sbjct 432 CGTCTGCGTGGTGGAA 417
>seq476667
Length=529
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328
||||||||| ||||| || || | || || ||||| || || | || ||| || |
Sbjct 76 AATGCAAATCTTTGTGAAGACCCTGACTGGGAAAACAATCACATTGGAGGTGGAAAGCTC 135
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
||| ||| | | | | || ||| ||||| ||||| || || | ||| ||
Sbjct 136 TGA---TACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGA 192
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| || || || || | ||| ||||||||| ||||||| | ||||| | || || ||
Sbjct 193 TCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTA 252
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
|||||||||||| ||||| || |||||| |||| | | ||||| || ||||
Sbjct 253 CAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGTCTGCGTGGTGGAA 305
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330
||||||||| ||||| || ||||| || || ||||| ||||| | ||| ||| ||
Sbjct 304 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 363
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
| || || | | | || || |||| || |||||||||||| | ||| || |
Sbjct 364 A-GACACAATTGATAATGTCAAGGCGAAGGTTCAGGACAAAGAAGGCATTCCCCCAGACC 422
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| || || || || | ||| || || ||||| ||||||| || ||| |||| |||||||
Sbjct 423 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACA 482
Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|||| || || || || || |||| |||||
Sbjct 483 ACATACAGAAGGAGTCAACTCTGCATTTGGTG 514
>seq25161
Length=2200
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425
||||| || || | ||| ||||| || || || || | ||| ||||||||| |||||
Sbjct 882 GACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 941
Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485
|| | ||||| | || || |||||||||||||| ||||| || |||||| |||| |
Sbjct 942 GACGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTC 1001
Query 110486 AGACTGCGAGGGGGAA 110501
||||||| || ||||
Sbjct 1002 CGACTGCGTGGTGGAA 1017
>seq54869
Length=20101
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||||||||| || || || ||||| || | || ||| |
Sbjct 4629 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 4688
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | || ||| |||||| ||||| || ||| | ||| ||| ||
Sbjct 4689 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 4748
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| || || | || || || ||||| ||||||| || || | || |||||||||
Sbjct 4749 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 4808
Query 110453 ATTCAAAAAGAATCTAC 110469
||||| || || || ||
Sbjct 4809 ATTCAGAAGGAGTCCAC 4825
>seq35568
Length=7068
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||||||||| || || || ||||| || | || ||| |
Sbjct 3433 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 3374
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | || ||| |||||| ||||| || ||| | ||| ||| ||
Sbjct 3373 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 3314
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| || || | || || || ||||| ||||||| || || | || |||||||||
Sbjct 3313 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3254
Query 110453 ATTCAAAAAGAATCTAC 110469
||||| || || || ||
Sbjct 3253 ATTCAGAAGGAGTCCAC 3237
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329
|||||||| |||||||| || | |||||||||||||| || | ||| || ||| ||
Sbjct 3661 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 3602
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || | | | || ||| || ||| ||||| || || | ||| ||
Sbjct 3601 GAC---ACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGAC 3545
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || | |||| ||| ||||| ||||| ||||||| || ||| | || || ||
Sbjct 3544 CAGCAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTAT 3485
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| |||||||| || || || ||||| ||||| | | ||||| || ||
Sbjct 3484 AATATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 3435
>seq36855
Length=2596
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425
||||| || || | ||| ||||| || || || || | | | ||||||||| |||||
Sbjct 138 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTACAGGTAAACAGTTGGAG 79
Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485
|||| ||||| | || || |||||||||||||| ||||| || |||||| |||| |
Sbjct 78 GATGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTC 19
Query 110486 AGACTGCGAGGGGGAA 110501
| ||||| || ||||
Sbjct 18 CGTCTGCGTGGTGGAA 3
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
||||| || ||||| ||||| | || ||||| || || ||| |||| || || ||
Sbjct 687 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 628
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || || | | || || ||||| ||||| || || | ||| ||
Sbjct 627 GACATTATTGACA---ATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGAC 571
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| ||||| || || | ||| || || ||||| ||||||| | ||||| | || || |||
Sbjct 570 CAGCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACACTTGCTGACTAC 511
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||||||||||||| || || | ||| ||||| | ||||| || || ||
Sbjct 510 AACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACTCCGTGGTGG 461
>seq624305
Length=475
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/231 (68%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || |||||||||||| | || || || ||||| || | || ||| |
Sbjct 111 ATGCAGATCTTTGTCAAAACTCTGACAGGGAAGACCATAACGTTGGAGGTAGAGAGTTCG 170
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | || ||| |||||| || || || ||| | ||| || ||
Sbjct 171 GATACGATTGACAATGTGAAAGCCAAGATTCAGGATAAGGAGGGCATCCCCCCAGACCAG 230
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || | |||| ||| ||||| ||||| ||||||| || ||| | || || || ||
Sbjct 231 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 290
Query 110453 ATTCAAAAAGAATCTACGT----TGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||||||| || || |||| ||||| ||||| | | ||||| || ||
Sbjct 291 ATTCAAAAGGAGTCCACGTACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 341
>seq212778
Length=353
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
||||| || || || || | ||| ||| ||||| ||||||||| ||||| | |||
Sbjct 176 GATCAGCAGAGGCTCATCTTTGCAGGTGAACAGTTGGAGGATGGAAGAACTCTTAAAGAT 117
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
|||||||||||||| ||||| || |||||| |||| | | ||||| || ||||
Sbjct 116 TACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGGCTGCGTGGAGGAA 62
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409692047689238
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |