Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq581596 96.9 3e-15 seq476667 93.3 3e-14 seq25161 93.3 3e-14 seq54869 89.7 4e-13 seq35568 89.7 4e-13 seq36855 87.8 1e-12 seq624305 82.4 6e-11 seq212778 82.4 6e-11 >seq581596 Length=910 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| ||||| || || || || | ||| ||||||||| ||||| Sbjct 552 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 493 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||| | || ||||||||||||||||| ||||| || |||||| |||| | Sbjct 492 GATGGAAGAACTCTTGCAGATTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTC 433 Query 110486 AGACTGCGAGGGGGAA 110501 | ||||| || |||| Sbjct 432 CGTCTGCGTGGTGGAA 417 >seq476667 Length=529 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 ||||||||| ||||| || || | || || ||||| || || | || ||| || | Sbjct 76 AATGCAAATCTTTGTGAAGACCCTGACTGGGAAAACAATCACATTGGAGGTGGAAAGCTC 135 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 ||| ||| | | | | || ||| ||||| ||||| || || | ||| || Sbjct 136 TGA---TACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGA 192 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || || || | ||| ||||||||| ||||||| | ||||| | || || || Sbjct 193 TCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTA 252 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||| ||||| || |||||| |||| | | ||||| || |||| Sbjct 253 CAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGTCTGCGTGGTGGAA 305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| ||||| || ||||| || || ||||| ||||| | ||| ||| || Sbjct 304 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 363 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | || || |||| || |||||||||||| | ||| || | Sbjct 364 A-GACACAATTGATAATGTCAAGGCGAAGGTTCAGGACAAAGAAGGCATTCCCCCAGACC 422 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || || ||||| ||||||| || ||| |||| ||||||| Sbjct 423 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACA 482 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||| || || || || || |||| ||||| Sbjct 483 ACATACAGAAGGAGTCAACTCTGCATTTGGTG 514 >seq25161 Length=2200 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| ||||| || || || || | ||| ||||||||| ||||| Sbjct 882 GACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 941 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 || | ||||| | || || |||||||||||||| ||||| || |||||| |||| | Sbjct 942 GACGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTC 1001 Query 110486 AGACTGCGAGGGGGAA 110501 ||||||| || |||| Sbjct 1002 CGACTGCGTGGTGGAA 1017 >seq54869 Length=20101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||||| || || || ||||| || | || ||| | Sbjct 4629 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 4688 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || ||| | ||| ||| || Sbjct 4689 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 4748 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || || || ||||| ||||||| || || | || ||||||||| Sbjct 4749 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 4808 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || || || || Sbjct 4809 ATTCAGAAGGAGTCCAC 4825 >seq35568 Length=7068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||||| || || || ||||| || | || ||| | Sbjct 3433 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 3374 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || ||| | ||| ||| || Sbjct 3373 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 3314 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || || || ||||| ||||||| || || | || ||||||||| Sbjct 3313 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3254 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || || || || Sbjct 3253 ATTCAGAAGGAGTCCAC 3237 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 |||||||| |||||||| || | |||||||||||||| || | ||| || ||| || Sbjct 3661 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 3602 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || ||| || ||| ||||| || || | ||| || Sbjct 3601 GAC---ACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGAC 3545 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | |||| ||| ||||| ||||| ||||||| || ||| | || || || Sbjct 3544 CAGCAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTAT 3485 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||| || || || ||||| ||||| | | ||||| || || Sbjct 3484 AATATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 3435 >seq36855 Length=2596 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| ||||| || || || || | | | ||||||||| ||||| Sbjct 138 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTACAGGTAAACAGTTGGAG 79 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||| | || || |||||||||||||| ||||| || |||||| |||| | Sbjct 78 GATGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTC 19 Query 110486 AGACTGCGAGGGGGAA 110501 | ||||| || |||| Sbjct 18 CGTCTGCGTGGTGGAA 3 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| ||||| | || ||||| || || ||| |||| || || || Sbjct 687 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 628 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || || | | || || ||||| ||||| || || | ||| || Sbjct 627 GACATTATTGACA---ATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGAC 571 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| || || | ||| || || ||||| ||||||| | ||||| | || || ||| Sbjct 570 CAGCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACACTTGCTGACTAC 511 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || | ||| ||||| | ||||| || || || Sbjct 510 AACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACTCCGTGGTGG 461 >seq624305 Length=475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| | || || || ||||| || | || ||| | Sbjct 111 ATGCAGATCTTTGTCAAAACTCTGACAGGGAAGACCATAACGTTGGAGGTAGAGAGTTCG 170 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| || || || ||| | ||| || || Sbjct 171 GATACGATTGACAATGTGAAAGCCAAGATTCAGGATAAGGAGGGCATCCCCCCAGACCAG 230 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| ||||| ||||| ||||||| || ||| | || || || || Sbjct 231 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 290 Query 110453 ATTCAAAAAGAATCTACGT----TGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || |||| ||||| ||||| | | ||||| || || Sbjct 291 ATTCAAAAGGAGTCCACGTACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 341 >seq212778 Length=353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || || || || | ||| ||| ||||| ||||||||| ||||| | ||| Sbjct 176 GATCAGCAGAGGCTCATCTTTGCAGGTGAACAGTTGGAGGATGGAAGAACTCTTAAAGAT 117 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| ||||| || |||||| |||| | | ||||| || |||| Sbjct 116 TACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGGCTGCGTGGAGGAA 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409692047689238