Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq620679 197 2e-44 seq206112 158 2e-32 seq367408 89.7 8e-12 >seq620679 Length=2600 Score = 197 bits (218), Expect = 2e-44 Identities = 235/318 (74%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| ||| || || ||||| | |||||||| || ||| Sbjct 1782 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTTTTTAAGC 1839 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || || ||||| || |||||||| ||||| || || ||| ||| ||| | ||| Sbjct 1840 CAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCCACG 1899 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | ||||| || ||||| ||| ||| || |||||| |||| ||||||| ||| Sbjct 1900 ATTCGCTCCGCGAAAGTCTCCGAGCCGTC------GATCCATTTCAGGGCCCACTGCGCC 1953 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 |||||| || | || | ||||||| ||| |||||||| || |||||| ||| | Sbjct 1954 TTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAGACGGGATTTCTCGTCCGAG 2013 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 || |||| |||||| |||| |||||| ||| |||| ||||||||||| || || ||| Sbjct 2014 TCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATCGCG 2073 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 2074 ATCTGGAAGCCGTAGAAG 2091 Score = 174 bits (192), Expect = 2e-37 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || ||||||||||||||||| | ||||| || ||||| ||||||||| Sbjct 2098 GCCTCCGAGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCG 2157 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| |||| ||||| |||| || | | || Sbjct 2158 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGG 2217 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||||| | ||| | |||| |||||||||||||||||||| || || ||| Sbjct 2218 GTTTCCCAGTGGCGCTGGTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCC 2277 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||||||||| ||| |||| | || ||||||| Sbjct 2278 TCGGCCTTCTTGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACA 2326 >seq206112 Length=358 Score = 158 bits (174), Expect = 2e-32 Identities = 158/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || || ||||||||| |||||| ||| ||| ||| Sbjct 205 TGTACTTGGTCACAGCCTTGGTGCCTTCAGACACGGCGTGCTTGGCCAATTCACCGGGCA 146 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || ||||||||||| |||| | ||| ||| ||||||||| | Sbjct 145 GGAGGAGACGGACAGCAGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 86 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||||| |||||| | | |||| | |||| |||||||| || || ||||||| Sbjct 85 GCGCCAAGCGGCTGGCCTCAGCGGCGATCCTCTCGAAGATGTCGTTCACGAAGGAGTTCA 26 Query 1485650 TGATCGACATCGATTTGTTGGAGAT 1485674 |||| ||||| | ||| |||||| Sbjct 25 TGATGGACATGGCCTTGGAGGAGAT 1 >seq367408 Length=502 Score = 89.7 bits (98), Expect = 8e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 796295 CGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATA 796354 |||| |||||||||||||||||||| || || ||||||||||| |||||||||||||| | Sbjct 497 CGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTCCCAGA 438 Query 796355 TCCGTTGGTAGCGGATGGGGAACA 796378 || |||| | || ||||||| Sbjct 437 TCTCCGGGTATTGAATCGGGAACA 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7849659541549074