Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq488379 107 2e-18 seq476667 104 2e-17 seq624305 102 6e-17 seq25161 100 2e-16 seq418407 95.1 1e-14 seq581596 89.7 4e-13 seq36855 89.7 4e-13 seq32509 89.7 4e-13 seq592805 86.0 5e-12 seq492976 86.0 5e-12 seq54869 86.0 5e-12 seq35568 86.0 5e-12 >seq488379 Length=457 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| ||||| || ||||||||| | || ||| ||| Sbjct 231 ATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATTACCCTGGAGGTTGAGAGCTC- 173 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || ||||| ||||| ||||| | || |||||| Sbjct 172 CGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGATCA 113 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| ||||| ||| ||||||||| || || | ||||| ||||| Sbjct 112 GCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAGGACGGCAGGACTCTTGCGGATTACAA 53 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 52 TATCCAGAAGGAGTCCACCCTGCACTTGGTG 22 >seq476667 Length=529 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || ||||| || || | || ||| ||| Sbjct 76 AATGCAAATCTTTGTGAAGACCCTGACTGGGAAAACAATCACATTGGAGGTGGAAAGCTC 135 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| |||||| || || || || | ||| |||| Sbjct 136 T-GATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 194 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||||||| Sbjct 195 AGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACA 254 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || |||||| |||| Sbjct 255 ACATTCAAAAGGAATCAACATTGCACTTGGT 285 >seq624305 Length=475 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||||||| | ||||| || ||||| || | || ||| | Sbjct 111 ATGCAGATCTTTGTCAAAACTCTGACAGGGAAGACCATAACGTTGGAGGTAGAGAGTTCG 170 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| ||||| || ||| | ||| || ||| Sbjct 171 GATACGATTGACAATGTGAAAGCCAAGATTCAGGATAAGGAGGGCATCCCCCCAGACCAG 230 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| ||||| ||||| ||||| | | ||| | || ||||| || Sbjct 231 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 290 Query 107736 ATTCAAAAGGAGTCTACGT----TGCACATGGTG 107765 |||||||||||||| |||| ||||| ||||| Sbjct 291 ATTCAAAAGGAGTCCACGTACTCTGCACTTGGTG 324 >seq25161 Length=2200 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||| Sbjct 903 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGAC 962 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||||||| || || |||||| |||| | || |||| || |||| Sbjct 963 TACAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGGAA 1017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||| | ||||| || ||||| || | || ||| | Sbjct 561 ATGCAGATCTTTGTTAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGTTCT 620 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||| || || || ||| | ||| |||||| Sbjct 621 GATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATACCCCCAGATCAG 680 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||||| ||||| | | || | || || ||||| Sbjct 681 CAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGATTACAAT 740 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || |||||||||||||| | ||| ||||| | | |||| || |||| Sbjct 741 ATCCAAAAGGAGTCTACTCTTCACCTGGTGCTCCGTCTGCGTGGTGGAA 789 >seq418407 Length=782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 489 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 548 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||||| |||||||| || | || || ||| Sbjct 549 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 608 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| ||||| | | | || |||| || |||||| Sbjct 609 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCACACCCTGGCTGATTACAAC 668 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 669 ATTCAAAAGGAGTCCAC 685 >seq581596 Length=910 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || || || || | || ||| ||| Sbjct 646 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 587 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| |||||| || || || || | ||| |||| Sbjct 586 T-GATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 528 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||| ||||||| | | ||| | || || |||| Sbjct 527 AGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGATTACA 468 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || |||||| |||| Sbjct 467 ACATTCAAAAGGAATCAACATTGCACTTGGT 437 >seq36855 Length=2596 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || || || || | || ||| ||| Sbjct 232 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 173 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| |||||| || || || || | ||| |||| Sbjct 172 T-GATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 114 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | | | ||||||||| ||||||| | | ||| | || ||||||| Sbjct 113 AGCAGAGGCTCATCTTTACAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGACTACA 54 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || |||||| |||| Sbjct 53 ACATTCAAAAGGAATCAACATTGCACTTGGT 23 >seq32509 Length=4583 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || | || ||||||||||| || | ||| ||| ||| Sbjct 1664 ATGCAAATCTTTGTCAAGACCCTTACTGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 1605 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| || ||| ||||| || || | ||| || || Sbjct 1604 -GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCA 1546 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| ||||| ||||| ||||| | | ||| | || ||||| || Sbjct 1545 GCAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAA 1486 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| || ||||| ||||| Sbjct 1485 TATTCAAAAGGAGTCCACTCTGCACTTGGTG 1455 >seq592805 Length=13616 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| ||||| || ||||||||| | || ||| ||| Sbjct 518 ATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATTACCCTGGAGGTTGAGAGCTC- 576 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || ||||| ||||| ||||| | || |||||| Sbjct 577 CGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGATCA 636 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || || ||||||| | || | | ||||| ||||| Sbjct 637 GCAGAGGTTGATCTTCGCTGGAAAGCAATTGGAGGATGGCAGGTCTCTTGCGGATTACAA 696 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| ||||| ||||| Sbjct 697 TATCCAGAAGGAGTCTACCCTGCACTTGGTG 727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| || || | ||| ||||||||||||| | || | ||| ||||| ||| ||||| Sbjct 383 GATAAGGAGGGAATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAG 442 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || || |||| || ||||| || || |||||||| || | ||| ||||| | Sbjct 443 GACGGCAGGACCCTGGCCGATTACAATATCCAGAAGGAGTCGACCCTTCACTTGGTGCTC 502 Query 107769 AGATTGCGAGGGG 107781 |||| |||||| Sbjct 503 CGATT--GAGGGG 513 >seq492976 Length=9861 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || ||||| |||| ||||| ||||| ||| |||| ||| ||| Sbjct 9048 ATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTC- 8990 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || || ||| | || || || Sbjct 8989 CGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 8930 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| ||||||| | || | || |||||||| Sbjct 8929 GCAGAGGCTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAA 8870 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 8869 CATCCAGAAGGAGTCGACTCTCCACCTGGTG 8839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| |||||||| ||||| || | || ||| ||| | Sbjct 8364 ATGCAGATTTTTGTGAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTCG 8305 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| ||||| ||||| | || ||| || Sbjct 8304 -GATACCATTGATAATGTCAAAGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGACCA 8246 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | ||| || || ||||| ||||||| || |||| || ||||| Sbjct 8245 GCAAAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCTGATTACAA 8186 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || | ||| |||| Sbjct 8185 CATTCAGAAGGAGTCCACCCTTCACTTGGT 8156 >seq54869 Length=20101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||||||||| ||||| || ||||| || | || ||| | Sbjct 4629 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 4688 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| || || || ||| | ||| ||| ||| Sbjct 4689 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 4748 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | || || || ||||| ||||| | | || | || || |||||| Sbjct 4749 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 4808 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 4809 ATTCAGAAGGAGTCCAC 4825 >seq35568 Length=7068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||||||||| ||||| || ||||| || | || ||| | Sbjct 3433 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 3374 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| || || || ||| | ||| ||| ||| Sbjct 3373 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 3314 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | || || || ||||| ||||| | | || | || || |||||| Sbjct 3313 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3254 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 3253 ATTCAGAAGGAGTCCAC 3237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395833784598574