Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq610020 95.1 2e-14 seq476667 87.8 3e-12 seq526479 86.0 1e-11 seq581596 84.2 3e-11 seq54869 84.2 3e-11 >seq610020 Length=13068 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 146126 TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 ||| |||||||| || || ||||| || ||||| |||||||| ||||| || || || || Sbjct 6430 TAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGA 6371 Query 146186 TAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | | |||| | ||||||||||||| |||||||| || ||| |||| | || || | Sbjct 6370 TGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTGAG 6311 Query 146246 ATTAAGAGGAGG 146257 || || ||||| Sbjct 6310 GTTGAGGGGAGG 6299 >seq476667 Length=529 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||| ||||| |||||| | || || ||| | Sbjct 306 TGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTCAG 365 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || | || |||||||||||||| || || || | Sbjct 366 ACACAATTGATAATGTCAAGGCGAAGGTTCAGGACAAAGAAGGCATTCCCCCAGACCAGC 425 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| |||||||| || || | || ||| ||| || | ||||||| || | Sbjct 426 AGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACAACA 485 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 |||| || || || ||| | ||||| || Sbjct 486 TACAGAAGGAGTCAACTCTGCATTTGGT 513 >seq526479 Length=2113 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146126 TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 ||| |||||||| || || ||||| || ||| | |||||||| ||||| || || || || Sbjct 2007 TAAGGAAGGCATCCCTCCAGATCAGCAGAGATTGATTTTTGCTGGTAAGCAGTTGGAAGA 2066 Query 146186 TAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCC 146232 | | |||| | ||||||||||||| |||||||| || ||| ||| Sbjct 2067 TGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCC 2113 >seq581596 Length=910 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || || || ||||| || | || || ||| | Sbjct 644 TGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTCTG 585 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || || || || ||||| || ||||| | Sbjct 584 ATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGC 525 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| |||||||||||||| || || ||| ||||| | ||||||| || | Sbjct 524 AGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGATTACAACA 465 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 464 TTCAAAAGGAATCAAC 449 >seq54869 Length=20101 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| ||||| || | || || ||| | | Sbjct 3742 TGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAAAGTTCAG 3801 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || || || || |||||||| || || || | Sbjct 3802 ATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAGC 3861 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || |||||||||||||| ||||| |||| ||| | | || | |||| || |||| Sbjct 3862 AGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCAGACTACAATA 3921 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || ||||| ||| | || || || || || Sbjct 3922 TTCAGAAGGAATCAACTCTTCACTTGGTGTTGCG 3955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780014982040720