Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq32757 192 6e-44 seq39735 188 8e-43 >seq32757 Length=9777 Score = 192 bits (212), Expect = 6e-44 Identities = 238/326 (73%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 157144 TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTT 157203 || ||| |||| ||| | || |||||||| || ||||| || |||||||| ||||| ||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 157204 GCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAAC 157263 |||| ||| | | || || ||||| || || || ||||| || | ||| |||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 157264 GCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTAC 157323 || || ||| | ||||| ||||| || |||||||| || || ||||||| ||| | ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 157324 AACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATG 157383 |||||||| |||| | || | || | |||||| | | || | | ||||||| Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940 Query 157384 GGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTAC 157443 || ||||||||||||||| || |||| | ||||||||||| ||||| |||||| || Sbjct 3941 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 4000 Query 157444 TCGGCACCAGTCGCTGCTGCGAGTGC 157469 || || || || || ||||| | ||| Sbjct 4001 TCAGCTCCTGTTGCAGCTGCTACTGC 4026 >seq39735 Length=4112 Score = 188 bits (208), Expect = 8e-43 Identities = 251/346 (73%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 157441 TACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGT 157500 || || || || || || ||||| | ||| | ||| | |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 157501 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTC 157560 || || || | ||||||||| || |||||||||||||| |||| ||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 157561 CAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTC 157620 || || |||||||| || |||||||| || || |||||||| || || ||||| ||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 157621 GGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGA 157679 || || || | ||| ||||||||| || | | || || | || | ||| || | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878 Query 157680 AACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTA 157739 ||| || |||| || || || | ||||||| ||||||||||| ||||| || || Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 157740 CAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAA 157785 || ||||| || || || ||||| || || || ||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541007065821280