Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq39735 242 4e-59 seq32757 158 1e-33 seq439774 125 9e-24 seq59901 120 4e-22 seq572135 89.7 6e-13 seq12963 87.8 2e-12 >seq39735 Length=4112 Score = 242 bits (268), Expect = 4e-59 Identities = 263/346 (76%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 177948 TACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGG 178006 || || || ||||||||||| || | || | ||||| | |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTAT-TTTCTTGATCTACCCAATTGGTCAAGG 1698 Query 178007 TTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATT 178066 || || || | ||||||||| || |||||||||||||| |||| |||| ||||||| Sbjct 1699 AAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATT 1758 Query 178067 CCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATT 178126 |||||| || ||||| |||||||||||||| || |||||||| ||||| ||||| ||||| Sbjct 1759 CCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATT 1818 Query 178127 CGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGA 178186 || || || || ||| |||||||||||| | | || || ||| | || | || Sbjct 1819 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGA 1878 Query 178187 GACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATA 178246 || ||||||| ||| || || | ||||||| ||||| ||||| |||||||| || Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 178247 TAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAA 178292 ||| ||||| || || |||||||| || || || |||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 158 bits (174), Expect = 1e-33 Identities = 225/313 (72%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 177660 GCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 177719 || ||| | ||||| || || || || || || || || |||||||| || |||| || Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 177720 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 177779 | | || || ||||| || || || ||||| || | || |||| || || ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 177780 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 177839 | ||||| || || || |||||||| || || ||||||| ||| | || |||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 177840 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTG 177897 |||| | || | || | |||||| | | || | || ||| |||||||| |||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947 Query 177898 AGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCAC 177957 ||||||||||| | |||||| ||||||||||| ||||| ||||||||| || || | Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 177958 CTGTTGCAGCAGC 177970 |||||||||| || Sbjct 4008 CTGTTGCAGCTGC 4020 >seq439774 Length=2317 Score = 125 bits (138), Expect = 9e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| ||||| || || || || || || |||||| | || || || ||||||| Sbjct 1362 CTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCT 1421 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 |||| || ||| | || ||| |||| || || || | ||||| || || || || |||| Sbjct 1422 GTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGT 1481 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||||||| || |||||||||||||| |||| | || ||| || | ||||| || | Sbjct 1482 CTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCG 1541 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 | || || | || ||| || ||||||| | || ||||| || || Sbjct 1542 CCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 1590 >seq59901 Length=2371 Score = 120 bits (132), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || |||||||| ||||| || || || || || || || ||| | || || Sbjct 2029 TTTGAGTGCCCTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTC 2088 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| ||||| || ||| | || ||| |||| || || || | ||||| || || Sbjct 2089 CCTTACTCTTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACC 2148 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || || |||||||||||| || |||||||||||||| |||| | || ||| || | Sbjct 2149 GTCGACCAGTCTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTC 2208 Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||||| || || || || | || ||| || ||||||| | || ||||| || || Sbjct 2209 ACTTGTGTCGCCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 2267 >seq572135 Length=2283 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 |||||| | | ||||| |||||| | ||| | ||||| | ||||| |||| || Sbjct 1809 TTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTG 1750 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 ||||| || || | ||||| ||||| || |||||||| || || | || | ||| | Sbjct 1749 CCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCA 1690 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCAT 138695 || || |||||||| || ||||||||||| |||||| || || ||| || | | | Sbjct 1689 GTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCT 1631 Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGT 138726 ||| || || ||||||| | || || ||| Sbjct 1630 GACCTGTGTCTCATACCCATCTTCAGACTGT 1600 >seq12963 Length=2429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||| | ||| | ||||| | ||||| |||| || ||||| || || | ||||| Sbjct 541 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 482 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| || |||||||| || || | || | ||| | || || |||||||| || Sbjct 481 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCC 422 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAGCATACCCCAC 138716 ||||||||||| |||||| || || ||| || | | |||| || || ||||||| | Sbjct 421 TTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 363 Query 138717 ATCCGATTGT 138726 || || ||| Sbjct 362 TTCAGACTGT 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 600928111568560