Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 242 4e-59
seq32757 158 1e-33
seq439774 125 9e-24
seq59901 120 4e-22
seq572135 89.7 6e-13
seq12963 87.8 2e-12
>seq39735
Length=4112
Score = 242 bits (268), Expect = 4e-59
Identities = 263/346 (76%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 177948 TACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGG 178006
|| || || ||||||||||| || | || | ||||| | |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTAT-TTTCTTGATCTACCCAATTGGTCAAGG 1698
Query 178007 TTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATT 178066
|| || || | ||||||||| || |||||||||||||| |||| |||| |||||||
Sbjct 1699 AAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATT 1758
Query 178067 CCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATT 178126
|||||| || ||||| |||||||||||||| || |||||||| ||||| ||||| |||||
Sbjct 1759 CCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATT 1818
Query 178127 CGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGA 178186
|| || || || ||| |||||||||||| | | || || ||| | || | ||
Sbjct 1819 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGA 1878
Query 178187 GACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATA 178246
|| ||||||| ||| || || | ||||||| ||||| ||||| |||||||| ||
Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938
Query 178247 TAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAA 178292
||| ||||| || || |||||||| || || || ||||||||||||
Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 158 bits (174), Expect = 1e-33
Identities = 225/313 (72%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 177660 GCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 177719
|| ||| | ||||| || || || || || || || || |||||||| || |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 177720 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 177779
| | || || ||||| || || || ||||| || | || |||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 177780 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 177839
| ||||| || || || |||||||| || || ||||||| ||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 177840 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTG 177897
|||| | || | || | |||||| | | || | || ||| |||||||| ||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947
Query 177898 AGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCAC 177957
||||||||||| | |||||| ||||||||||| ||||| ||||||||| || || |
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 177958 CTGTTGCAGCAGC 177970
|||||||||| ||
Sbjct 4008 CTGTTGCAGCTGC 4020
>seq439774
Length=2317
Score = 125 bits (138), Expect = 9e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586
|||||||| ||||| || || || || || || |||||| | || || || |||||||
Sbjct 1362 CTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCT 1421
Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646
|||| || ||| | || ||| |||| || || || | ||||| || || || || ||||
Sbjct 1422 GTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGT 1481
Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706
|||||||| || |||||||||||||| |||| | || ||| || | ||||| || |
Sbjct 1482 CTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCG 1541
Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755
| || || | || ||| || ||||||| | || ||||| || ||
Sbjct 1542 CCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 1590
>seq59901
Length=2371
Score = 120 bits (132), Expect = 4e-22
Identities = 170/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576
||||| || |||||||| ||||| || || || || || || || ||| | || ||
Sbjct 2029 TTTGAGTGCCCTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTC 2088
Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636
|| ||||| ||||| || ||| | || ||| |||| || || || | ||||| || ||
Sbjct 2089 CCTTACTCTTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACC 2148
Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696
|| || |||||||||||| || |||||||||||||| |||| | || ||| || |
Sbjct 2149 GTCGACCAGTCTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTC 2208
Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755
||||| || || || || | || ||| || ||||||| | || ||||| || ||
Sbjct 2209 ACTTGTGTCGCCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 2267
>seq572135
Length=2283
Score = 89.7 bits (98), Expect = 6e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576
|||||| | | ||||| |||||| | ||| | ||||| | ||||| |||| ||
Sbjct 1809 TTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTG 1750
Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636
||||| || || | ||||| ||||| || |||||||| || || | || | ||| |
Sbjct 1749 CCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCA 1690
Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCAT 138695
|| || |||||||| || ||||||||||| |||||| || || ||| || | | |
Sbjct 1689 GTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCT 1631
Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGT 138726
||| || || ||||||| | || || |||
Sbjct 1630 GACCTGTGTCTCATACCCATCTTCAGACTGT 1600
>seq12963
Length=2429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597
|||||| | ||| | ||||| | ||||| |||| || ||||| || || | |||||
Sbjct 541 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 482
Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657
||||| || |||||||| || || | || | ||| | || || |||||||| ||
Sbjct 481 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCC 422
Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAGCATACCCCAC 138716
||||||||||| |||||| || || ||| || | | |||| || || ||||||| |
Sbjct 421 TTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 363
Query 138717 ATCCGATTGT 138726
|| || |||
Sbjct 362 TTCAGACTGT 353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 600928111568560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |