Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq523085 100 7e-16 seq46655 95.1 3e-14 >seq523085 Length=2158 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| || |||||||||||| Sbjct 455 CATTTGAATGATGGAGACTTTGTGCTCTTCAATCGTCAACCTAGTCTCCATAAAATGTCT 396 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| || | | ||||| | | || | || |||||| ||||| | || Sbjct 395 ATCATGGGGCACAGAATCAAAATCATGCCTTACTCAACTTTTCGACTAAATCTCTCTGTC 336 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||||| ||||| ||||||||||| ||||||||||||||||| || || || ||| Sbjct 335 ACTTCGCCTTACAATGCTGATTTTGATGGGGATGAAATGAATATGCACGTTCCCCAGTCA 276 >seq46655 Length=1626 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| || |||||||||||| Sbjct 508 CATTTGAATGATGGAGACTTTGTGCTCTTCAATCGTCAACCTAGTCTCCATAAAATGTCT 567 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| || | | ||||| | | || | || |||||| ||||| | || Sbjct 568 ATCATGGGGCACAGAATCAAAATCATGCCTTACTCAACTTTTCGACTAAATCTCTCTGTC 627 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||||| ||||| | ||||||||| ||||||||||||||||| || || || ||| Sbjct 628 ACTTCGCCTTACAATGCTGGTTTTGATGGGGATGAAATGAATATGCACGTTCCCCAGTCA 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177294336591326