Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 269 8e-68
seq32757 165 2e-36
>seq39735
Length=4112
Score = 269 bits (298), Expect = 8e-68
Identities = 271/347 (78%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 19895 TACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGG 19953
|| || ||||| |||||||| || |||| | ||||| | ||||||| ||||||| ||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTAT-TTTCTTGATCTACCCAATTGGTCAAGG 1698
Query 19954 TAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATT 20013
||||| || || | ||||||| | || ||||| ||||| ||||||| |||| | |||||
Sbjct 1699 AAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATT 1758
Query 20014 CCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATT 20073
|||||| || || ||||| || |||||||| || |||||||| |||||||||||||||||
Sbjct 1759 CCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATT 1818
Query 20074 CGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTG 20132
|| || || ||||||||||| ||||| ||||| | || || | || | ||| | | |
Sbjct 1819 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGG 1877
Query 20133 AGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCT 20192
| || || ||| | ||| | || | ||||||| || || ||||| ||||| ||||
Sbjct 1878 AAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 1937
Query 20193 ATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAA 20239
|||| |||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1938 ATAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 165 bits (182), Expect = 2e-36
Identities = 240/331 (73%), Gaps = 10/331 (3%)
Strand=Plus/Plus
Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657
|| |||||||| |||||||| || || || || || |||||||| || || ||||| ||
Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760
Query 19658 TCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGC 19714
|| || | | || ||||| |||||||| || || || || ||| | | || | | ||
Sbjct 3761 TCTGG-ATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGC 3819
Query 19715 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTC 19774
| || || || | ||||| |||||||| |||||||| ||| ||||||||||| |
Sbjct 3820 A--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTA 3877
Query 19775 TACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CTATGCTT 19832
|||||||| || || | | || | || | |||||| | |||| | || ||||
Sbjct 3878 TACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT- 3935
Query 19833 ACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTG 19892
| ||||| || |||||||||||||| | || || || ||| | ||||||||| |||||
Sbjct 3936 ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTG 3995
Query 19893 CCTACTCTGCTCCGGTTGCAGCCGCCTCTGC 19923
| || || ||||| |||||||| || ||||
Sbjct 3996 CATATTCAGCTCCTGTTGCAGCTGCTACTGC 4026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147722503997628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |