Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq39735 269 8e-68 seq32757 165 2e-36 >seq39735 Length=4112 Score = 269 bits (298), Expect = 8e-68 Identities = 271/347 (78%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 19895 TACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGG 19953 || || ||||| |||||||| || |||| | ||||| | ||||||| ||||||| || Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTAT-TTTCTTGATCTACCCAATTGGTCAAGG 1698 Query 19954 TAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATT 20013 ||||| || || | ||||||| | || ||||| ||||| ||||||| |||| | ||||| Sbjct 1699 AAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATT 1758 Query 20014 CCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATT 20073 |||||| || || ||||| || |||||||| || |||||||| ||||||||||||||||| Sbjct 1759 CCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATT 1818 Query 20074 CGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTG 20132 || || || ||||||||||| ||||| ||||| | || || | || | ||| | | | Sbjct 1819 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGG 1877 Query 20133 AGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCT 20192 | || || ||| | ||| | || | ||||||| || || ||||| ||||| |||| Sbjct 1878 AAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 1937 Query 20193 ATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAA 20239 |||| |||||||||||||||||||| ||||| || |||||||||||| Sbjct 1938 ATAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 165 bits (182), Expect = 2e-36 Identities = 240/331 (73%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || |||||||| |||||||| || || || || || |||||||| || || ||||| || Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 19658 TCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGC 19714 || || | | || ||||| |||||||| || || || || ||| | | || | | || Sbjct 3761 TCTGG-ATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGC 3819 Query 19715 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTC 19774 | || || || | ||||| |||||||| |||||||| ||| ||||||||||| | Sbjct 3820 A--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTA 3877 Query 19775 TACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CTATGCTT 19832 |||||||| || || | | || | || | |||||| | |||| | || |||| Sbjct 3878 TACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT- 3935 Query 19833 ACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTG 19892 | ||||| || |||||||||||||| | || || || ||| | ||||||||| ||||| Sbjct 3936 ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTG 3995 Query 19893 CCTACTCTGCTCCGGTTGCAGCCGCCTCTGC 19923 | || || ||||| |||||||| || |||| Sbjct 3996 CATATTCAGCTCCTGTTGCAGCTGCTACTGC 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147722503997628