Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq39735 212 2e-50 seq32757 174 5e-39 >seq39735 Length=4112 Score = 212 bits (234), Expect = 2e-50 Identities = 256/346 (74%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 29023 TACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGT 29082 || |||||||| || ||||| || |||| ||||| | |||||||| | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 29083 TCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTC 29142 ||| |||| |||||| | || || || || || ||||||| |||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 29143 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTC 29202 ||||| || || ||||| || |||||||| || |||||||| || || ||||| || || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 29203 GGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGA 29261 || || || ||||| ||||| ||||| ||||| | || || || | | ||| | | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGATCAGGGA 1878 Query 29262 GACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTA 29321 || || ||| | ||| || | ||||||| || || ||||| ||||| || || Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 29322 TAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAA 29367 ||| |||||||||||||| ||||| ||||| || |||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 174 bits (192), Expect = 5e-39 Identities = 240/330 (73%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || |||||||| |||||||| ||||| || || || |||||||| || || |||||||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCA 28843 ||||| | | || || |||||||| || || || || ||| | | || | | ||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 28844 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 28903 || || || | ||||| |||||||| |||||||| ||| ||||||||||| | | Sbjct 3821 --GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTAT 3878 Query 28904 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTTA 28961 ||||||| || || | | || | || | |||||| | |||| || || ||| || Sbjct 3879 ACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TA 3936 Query 28962 CATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGC 29021 ||||| || |||||||||||||| | || || || ||| | || |||||| ||| || Sbjct 3937 TATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGC 3996 Query 29022 ATACTCAGCTCCCGTCGCAGCGGCATCTGC 29051 ||| |||||||| || ||||| || |||| Sbjct 3997 ATATTCAGCTCCTGTTGCAGCTGCTACTGC 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145575383812236