Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq39735 228 2e-55 seq32757 201 3e-47 seq455362 98.7 3e-16 >seq39735 Length=4112 Score = 228 bits (252), Expect = 2e-55 Identities = 259/345 (75%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 19114 TACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGT 19173 || |||||||||||||| || || |||| | ||| | |||| ||| |||||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 19174 TCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTC 19233 |||| |||| ||||||| | || || |||||| ||||||| |||| |||||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 19234 CAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTC 19293 || ||||| || |||||||| |||||||| || |||||||| ||||| |||||||| || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 19294 GGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGA 19352 ||||| || ||||| ||||| ||||| ||||| | || || | || | ||| | | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878 Query 19353 AACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTA 19412 ||| || ||| | | |||| || | || |||| || || ||||| ||||| || || Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 19413 TAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCA 19457 ||| || || || |||||||| || ||||| || | || ||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 201 bits (222), Expect = 3e-47 Identities = 246/330 (75%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || |||||||| ||||||||||||||||| ||||| |||||||| || || || |||||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 18934 | || | | ||||| |||||||| || || || || ||| | | || | | ||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 18935 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 18994 || || || | ||||| |||||||| |||||||| ||| ||||||||||| | | Sbjct 3821 --GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTAT 3878 Query 18995 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTTA 19052 ||||||| || || | | || | || | |||||| | |||| || || ||| || Sbjct 3879 ACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TA 3936 Query 19053 CATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGC 19112 ||||| || |||||||||||||| | || || || ||||||||||||||| |||||| Sbjct 3937 TATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGC 3996 Query 19113 CTACTCAGCTCCTGTTGCCGCAGCCTCTGC 19142 || |||||||||||||| || || |||| Sbjct 3997 ATATTCAGCTCCTGTTGCAGCTGCTACTGC 4026 >seq455362 Length=6327 Score = 98.7 bits (108), Expect = 3e-16 Identities = 129/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 18745 ACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 18804 |||| ||| |||||||| || || |||||| | ||||||| || | | | | Sbjct 878 ACAG-TAAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACC 820 Query 18805 GCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCAT 18863 || ||| | ||| || |||||||| ||||||||||||||||| ||||| |||||||| || Sbjct 819 GCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 761 Query 18864 CCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCC 18918 || || |||||| | || | | ||||| |||||||| || || || || ||| Sbjct 760 TCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCC 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140099592096828