Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq229824 113 4e-20
seq620679 109 5e-19
seq62158 86.0 6e-12
seq54597 82.4 7e-11
>seq229824
Length=340
Score = 113 bits (124), Expect = 4e-20
Identities = 162/225 (72%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 46761 CCATGCGTTCGC-AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819
|| ||||| ||| |||||||| ||||||||| |||| |||||||| || ||| ||
Sbjct 42 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCT---CCGAGAC 97
Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879
| || ||||| || ||||| ||||| || ||||| | || || ||||| || ||
Sbjct 98 TTTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTT 157
Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939
||| || |||| | |||| || | |||||||| ||||| ||| |||||
Sbjct 158 CTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGA 217
Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984
|||||||||||| || ||||| || ||| ||||| ||||||||
Sbjct 218 GTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGTCT 262
>seq620679
Length=2600
Score = 109 bits (120), Expect = 5e-19
Identities = 161/225 (72%), Gaps = 5/225 (2%)
Strand=Plus/Minus
Query 46761 CCATGCGTTCGC-AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819
|| ||||| ||| |||||||| ||||||||| |||| |||||||| || | | ||
Sbjct 1970 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCG---GAGAC 1915
Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879
| || ||||| || ||||| ||||| || ||||| | || || ||||| || ||
Sbjct 1914 TTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTT 1855
Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939
||| || |||| |||||| || | |||||||| ||||| ||| |||||
Sbjct 1854 CTGCGCGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGA 1795
Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984
|||||||||||| || ||||| || ||| ||||| ||||| ||
Sbjct 1794 GTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCT 1750
>seq62158
Length=5977
Score = 86.0 bits (94), Expect = 6e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993
|||| || |||||||||||| || ||| || || |||||||| || |||| |||
Sbjct 748 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 807
Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053
| |||||||| ||||| ||||| |||||||| || || || || || | | |
Sbjct 808 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 867
Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113
| | || ||| | |||||| |||| || | || || || || || ||||| | ||
Sbjct 868 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 927
Query 132114 AAATCTGCAT 132123
||||||||||
Sbjct 928 AAATCTGCAT 937
>seq54597
Length=20763
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993
|||| || |||||||||||| || ||| || || |||||||| || |||| |||
Sbjct 12913 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 12972
Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053
| |||||||| ||||| ||||| |||||||| || || || || || | | |
Sbjct 12973 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 13032
Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113
| | || ||| | |||||| |||| || | || || || || || ||||| | ||
Sbjct 13033 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 13092
Query 132114 AAATCTGCAT 132123
| ||||||||
Sbjct 13093 ATATCTGCAT 13102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472881919919760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |