Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq229824 113 4e-20 seq620679 109 5e-19 seq62158 86.0 6e-12 seq54597 82.4 7e-11 >seq229824 Length=340 Score = 113 bits (124), Expect = 4e-20 Identities = 162/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 46761 CCATGCGTTCGC-AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| |||||||| ||||||||| |||| |||||||| || ||| || Sbjct 42 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCT---CCGAGAC 97 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| ||||| || ||||| | || || ||||| || || Sbjct 98 TTTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTT 157 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| | |||| || | |||||||| ||||| ||| ||||| Sbjct 158 CTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGA 217 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 |||||||||||| || ||||| || ||| ||||| |||||||| Sbjct 218 GTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGTCT 262 >seq620679 Length=2600 Score = 109 bits (120), Expect = 5e-19 Identities = 161/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 46761 CCATGCGTTCGC-AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| |||||||| ||||||||| |||| |||||||| || | | || Sbjct 1970 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCG---GAGAC 1915 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| ||||| || ||||| | || || ||||| || || Sbjct 1914 TTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTT 1855 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| |||||| || | |||||||| ||||| ||| ||||| Sbjct 1854 CTGCGCGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGA 1795 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 |||||||||||| || ||||| || ||| ||||| ||||| || Sbjct 1794 GTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCT 1750 >seq62158 Length=5977 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || |||||||||||| || ||| || || |||||||| || |||| ||| Sbjct 748 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 807 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| |||||||| || || || || || | | | Sbjct 808 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 867 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || ||| | |||||| |||| || | || || || || || ||||| | || Sbjct 868 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 927 Query 132114 AAATCTGCAT 132123 |||||||||| Sbjct 928 AAATCTGCAT 937 >seq54597 Length=20763 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || |||||||||||| || ||| || || |||||||| || |||| ||| Sbjct 12913 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 12972 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| |||||||| || || || || || | | | Sbjct 12973 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 13032 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || ||| | |||||| |||| || | || || || || || ||||| | || Sbjct 13033 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 13092 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 13093 ATATCTGCAT 13102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472881919919760