Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq620679 333 4e-85 seq206112 145 1e-28 seq367408 91.5 2e-12 >seq620679 Length=2600 Score = 333 bits (368), Expect = 4e-85 Identities = 414/562 (74%), Gaps = 10/562 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||| ||| | |||||| |||| || | ||||||| || | |||| | | Sbjct 2363 GAGCCGCTCCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAGTACCCGGAG 2304 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || ||||||||||| || || |||||||||||||||||||| || Sbjct 2303 ATCTGGGAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGATCT 2245 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || | ||| | |||||||| | || | | || |||| || ||||||| || Sbjct 2244 CGACCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACTCA 2185 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| || ||||||| ||| |||||||| |||||| || ||||| | | Sbjct 2184 CGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGAAGGT 2126 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| |||||||| | | ||||| ||| || ||||| ||||||||||| || | Sbjct 2125 TCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTG 2066 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || | ||| ||||| |||| |||||| |||| ||| ||| || Sbjct 2065 AGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGACG 2006 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 |||| || |||||||| ||| ||||||| | || | || ||||||||| | | Sbjct 2005 AGAAATCCCGTCTCTTTCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCAGT 1946 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCT 1456194 |||| |||| |||||| || ||| || ||||| || ||||| |||| | || Sbjct 1945 GGGCCCTGAAATGGATC------GACGGCTCGGAGACTTTCGCGGAGCGAATCGTGGCCT 1892 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||| |||| || || ||||| |||||||| || |||||||| || |||||||| || | Sbjct 1891 TCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATATTTTGGCTTAAAA 1832 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| | ||||| ||||| Sbjct 1831 AGCGCGGGTTGATGCCGGGTCT 1810 >seq206112 Length=358 Score = 145 bits (160), Expect = 1e-28 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||||| ||||||||||| || || |||||||| |||| | |||| Sbjct 3 CTCCTCCAAGGCCATGTCCATCATGAACTCCTTCGTGAACGACATCTTCGAGAGGATCGC 62 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | | |||||| | ||| |||||| || |||||||||| ||| ||| | | || ||||| Sbjct 63 CGCTGAGGCCAGCCGCTTGGCGCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGAT 122 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||| || || || || || ||| ||| ||| |||||| ||||||||| || || || Sbjct 123 CCAGACTGCTGTCCGTCTCCTCCTGCCCGGTGAATTGGCCAAGCACGCCGTGTCTGAAGG 182 Query 725138 CACCA 725142 ||||| Sbjct 183 CACCA 187 >seq367408 Length=502 Score = 91.5 bits (100), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || ||| | |||||| |||| || | ||||||| || | |||| | | Sbjct 377 GAGCCACTCCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAATACCCGGAG 436 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || ||||||||||| || || |||||||||||||||||||| || Sbjct 437 ATCTGGGAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGATCT 495 Query 1455836 CG 1455837 || Sbjct 496 CG 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7117435628774492