Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 333 4e-85
seq206112 145 1e-28
seq367408 91.5 2e-12
>seq620679
Length=2600
Score = 333 bits (368), Expect = 4e-85
Identities = 414/562 (74%), Gaps = 10/562 (2%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||||| ||| | |||||| |||| || | ||||||| || | |||| | |
Sbjct 2363 GAGCCGCTCCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAGTACCCGGAG 2304
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| ||||| |||||| || ||||||||||| || || |||||||||||||||||||| ||
Sbjct 2303 ATCTGGGAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGATCT 2245
Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895
|| | ||| | |||||||| | || | | || |||| || ||||||| ||
Sbjct 2244 CGACCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACTCA 2185
Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955
|||||||||||| || ||||||| ||| |||||||| |||||| || ||||| | |
Sbjct 2184 CGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGAAGGT 2126
Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015
| ||||| |||||||| | | ||||| ||| || ||||| ||||||||||| || |
Sbjct 2125 TCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTG 2066
Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075
| ||||||||||| || | ||| ||||| |||| |||||| |||| ||| ||| ||
Sbjct 2065 AGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGACG 2006
Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135
|||| || |||||||| ||| ||||||| | || | || ||||||||| | |
Sbjct 2005 AGAAATCCCGTCTCTTTCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCAGT 1946
Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCT 1456194
|||| |||| |||||| || ||| || ||||| || ||||| |||| | ||
Sbjct 1945 GGGCCCTGAAATGGATC------GACGGCTCGGAGACTTTCGCGGAGCGAATCGTGGCCT 1892
Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253
| ||| |||| || || ||||| |||||||| || |||||||| || |||||||| || |
Sbjct 1891 TCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATATTTTGGCTTAAAA 1832
Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275
||||||| | ||||| |||||
Sbjct 1831 AGCGCGGGTTGATGCCGGGTCT 1810
>seq206112
Length=358
Score = 145 bits (160), Expect = 1e-28
Identities = 143/185 (77%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
|||| |||| ||||||| ||||||||||| || || |||||||| |||| | ||||
Sbjct 3 CTCCTCCAAGGCCATGTCCATCATGAACTCCTTCGTGAACGACATCTTCGAGAGGATCGC 62
Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077
| | |||||| | ||| |||||| || |||||||||| ||| ||| | | || |||||
Sbjct 63 CGCTGAGGCCAGCCGCTTGGCGCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGAT 122
Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137
|||||| || || || || || ||| ||| ||| |||||| ||||||||| || || ||
Sbjct 123 CCAGACTGCTGTCCGTCTCCTCCTGCCCGGTGAATTGGCCAAGCACGCCGTGTCTGAAGG 182
Query 725138 CACCA 725142
|||||
Sbjct 183 CACCA 187
>seq367408
Length=502
Score = 91.5 bits (100), Expect = 2e-12
Identities = 94/122 (77%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||| || ||| | |||||| |||| || | ||||||| || | |||| | |
Sbjct 377 GAGCCACTCCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAATACCCGGAG 436
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| ||||| |||||| || ||||||||||| || || |||||||||||||||||||| ||
Sbjct 437 ATCTGGGAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGATCT 495
Query 1455836 CG 1455837
||
Sbjct 496 CG 497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7117435628774492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |