Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 224 1e-53
seq32757 161 1e-34
>seq39735
Length=4112
Score = 224 bits (248), Expect = 1e-53
Identities = 259/346 (75%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 158066 TATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGT 158125
||||| ||||| || || || || | ||| | ||| | |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 158126 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTC 158185
|| || || | ||||||||| || |||||||||||||| |||| |||| ||||||||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 158186 CAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 158245
||||| || |||||||||||||||||||| || || ||||| ||||| ||||| |||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 158246 GGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGA 158304
|| || || || ||| |||||||||||| | | || || | || | | || | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878
Query 158305 AACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTA 158364
||| || |||| || || || | ||||| | ||||||||||| ||||| |||||
Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938
Query 158365 CAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAA 158410
|| ||||| || || ||||| || || || || ||||||||||||
Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 161 bits (178), Expect = 1e-34
Identities = 226/317 (71%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 157778 GCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCA 157837
|| ||| | ||||| || || || || ||||| || || || ||||| ||| |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 157838 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGT 157897
| | || || ||||| || || || ||||| || | |||| ||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 157898 CTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGT 157957
| ||||| ||||| || |||||||| || ||| |||| || ||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 157958 CCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAG 158017
|||| | || | || | |||||| | | || | | ||||||||| ||||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAG 3949
Query 158018 TGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCA 158077
|||||||| || |||| | ||||||||||| ||||| ||| |||||||| |||||
Sbjct 3950 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCT 4009
Query 158078 GTCGCTGCAGCGAGTGC 158094
|| || || || | |||
Sbjct 4010 GTTGCAGCTGCTACTGC 4026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568540330735200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |