Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq39735 215 6e-51 seq32757 149 7e-31 seq572135 100 3e-16 seq12963 100 3e-16 seq439774 95.1 1e-14 seq59901 95.1 1e-14 >seq39735 Length=4112 Score = 215 bits (238), Expect = 6e-51 Identities = 257/346 (74%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 160350 TATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGT 160409 ||||| ||||| || || || || ||||| | ||| | | || || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 160410 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTC 160469 || || || | ||||||||| || |||||||||||||| |||| |||| |||||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 160470 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTC 160529 ||||| || ||||| ||||||||||| || || |||||||| || || ||||| ||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 160530 GGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGA 160588 || || || | ||| ||||||||| || | | || || | || | | || | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878 Query 160589 AACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTA 160648 ||| || |||| || || || | ||||| | ||||||||||||||||| ||||| Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 160649 CAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAA 160694 || ||||| || || |||||||| || || || |||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 149 bits (164), Expect = 7e-31 Identities = 227/320 (71%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 160062 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 160121 || ||| | ||||| || || || || || || || || |||||||| || |||| || Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 160122 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 160181 | | || || ||||| || || || ||||| || | || |||| || || ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 160182 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 160241 | ||||| || || || |||||||| || || ||||||| ||| | || |||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 160242 CCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTG 160299 |||| | || | || | |||||| | | || | || ||| |||||||| |||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947 Query 160300 AGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTC 160359 ||||||||||| | |||| | ||||||||||| ||||| ||| |||||||| |||| Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 160360 CAGTCGCTGCAGCATCTGCT 160379 | || || || || ||||| Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027 >seq572135 Length=2283 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 1788 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 1729 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | ||||| |||| ||||||||||| ||| Sbjct 1728 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCC 1669 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTT-TTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || || |||| ||||| |||| || | Sbjct 1668 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 1610 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 | || |||||||| || ||| Sbjct 1609 TTCAGACTGTGTGATCCACACT 1588 >seq12963 Length=2429 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 541 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 482 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | ||||| |||| ||||||||||| ||| Sbjct 481 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCC 422 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTT-TTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || || |||| ||||| |||| || | Sbjct 421 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 363 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 | || |||||||| || ||| Sbjct 362 TTCAGACTGTGTGATCCACACT 341 >seq439774 Length=2317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | || || || || |||||||| | || | || || ||||| || ||| Sbjct 1373 TACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGT 1432 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 | ||||||||||| || || || || || || || || ||||||||||||||| | Sbjct 1433 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 1492 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 || | ||||||||||||||||| ||| || | | || ||||| || |||||| Sbjct 1493 TTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCT 1549 >seq59901 Length=2371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | || || || || ||||| || | || | || |||||||| || ||| Sbjct 2050 TACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTCCCTTACTCTTGTCGCGCCGGT 2109 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 | ||||||||||| || || || || || || || || ||||||||||||||| | Sbjct 2110 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 2169 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 || | ||||||||||||||||| ||| || | | || ||||| || |||||| Sbjct 2170 TTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCT 2226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555126118989200