Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 239 5e-58
seq32757 149 8e-31
>seq39735
Length=4112
Score = 239 bits (264), Expect = 5e-58
Identities = 260/345 (75%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 178239 TACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGT 178298
|| || ||||| || ||||| || | || | ||| || |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 178299 TCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTC 178358
|||||||||| ||||| || || ||||||||||| ||||||| |||| |||| |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 178359 CAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTC 178418
||||| || |||||||| || |||||||| || |||||| | ||||| || ||||||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 178419 GGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAA 178478
|| ||||| || |||||||| ||||| ||||||||||| || ||| | | | |||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 178479 ACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATAC 178538
|| || |||| ||||| || | ||||| | ||||| ||||| ||||| || ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 178539 AACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 178583
|| ||||| || || ||||| || || || || ||||||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 149 bits (164), Expect = 8e-31
Identities = 223/313 (71%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 177951 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 178010
|| ||| | ||||| || || || || || || || || |||||||| || |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 178011 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 178070
| | || || ||||| || || || ||||| || | || |||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 178071 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 178130
| ||||| || || || |||||||| || || ||||||| ||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 178131 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGTG 178188
|||| | || | || | |||||| | ||||| | || ||| || ||||| ||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947
Query 178189 AGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTC 178248
||||||||||| | |||| | ||||||||||| ||||| ||| ||||| || ||||
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 178249 CAGTAGCAGCAGC 178261
| || ||||| ||
Sbjct 4008 CTGTTGCAGCTGC 4020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 601267832434080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |