Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 239 5e-58
seq32757 134 2e-26
>seq39735
Length=4112
Score = 239 bits (264), Expect = 5e-58
Identities = 262/346 (76%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 158769 TATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGT 158828
||||| || || || || || || ||||| | ||| | |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 158829 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTC 158888
|| || || | ||||||||| || |||||||||||||| |||| |||| ||||||||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 158889 CAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 158948
||||| || |||||||||||||||||||| || || ||||| ||||| ||||| |||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 158949 GGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGA 159007
|| || || || ||| |||||||||||| | | || || | || | | || | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878
Query 159008 AACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATA 159067
||| || |||| || || || | ||||||| ||||| ||||| |||||||| ||
Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938
Query 159068 TAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAA 159113
||||||||| || || |||||||| || || || ||||||||||||
Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 134 bits (148), Expect = 2e-26
Identities = 224/320 (70%), Gaps = 4/320 (1%)
Strand=Plus/Plus
Query 158481 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 158540
|| ||| | ||||| || || || || || || || || |||||||| || |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 158541 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 158600
| | || || ||||| || || || ||||| || | || |||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 158601 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 158660
| ||||| || || || |||||||| || || ||||||| ||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 158661 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTG 158718
|||| | || | || | |||||| | | || | || ||| |||||||| ||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947
Query 158719 AATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCAC 158778
| ||||||||| | ||| | ||||||||||| ||||| ||| |||||||| || |
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 158779 CAGTCGCTGCAGCATCTGCT 158798
| || || || || |||||
Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548150728881280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |