Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq39735 239 5e-58 seq32757 134 2e-26 >seq39735 Length=4112 Score = 239 bits (264), Expect = 5e-58 Identities = 262/346 (76%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 158769 TATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGT 158828 ||||| || || || || || || ||||| | ||| | |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 158829 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTC 158888 || || || | ||||||||| || |||||||||||||| |||| |||| |||||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 158889 CAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 158948 ||||| || |||||||||||||||||||| || || ||||| ||||| ||||| ||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 158949 GGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGA 159007 || || || || ||| |||||||||||| | | || || | || | | || | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878 Query 159008 AACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATA 159067 ||| || |||| || || || | ||||||| ||||| ||||| |||||||| || Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 159068 TAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAA 159113 ||||||||| || || |||||||| || || || |||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 134 bits (148), Expect = 2e-26 Identities = 224/320 (70%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 158481 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 158540 || ||| | ||||| || || || || || || || || |||||||| || |||| || Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 158541 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 158600 | | || || ||||| || || || ||||| || | || |||| || || ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 158601 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 158660 | ||||| || || || |||||||| || || ||||||| ||| | || |||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 158661 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTG 158718 |||| | || | || | |||||| | | || | || ||| |||||||| |||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947 Query 158719 AATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCAC 158778 | ||||||||| | ||| | ||||||||||| ||||| ||| |||||||| || | Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 158779 CAGTCGCTGCAGCATCTGCT 158798 | || || || || ||||| Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548150728881280