Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq39735 224 1e-53 seq32757 183 4e-41 >seq39735 Length=4112 Score = 224 bits (248), Expect = 1e-53 Identities = 259/346 (75%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 179251 TACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGT 179310 || || || || || || ||||| | ||| | ||| | |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 179311 TCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTC 179370 || ||||| | ||||||||| || |||||||||||||| |||| |||| |||||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 179371 CAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 179430 ||||| || |||||||||||||||||||| || || ||||| ||||| ||||| ||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 179431 GGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGA 179489 || || || || ||| ||||||||| || | | || || | || | ||| || | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878 Query 179490 AACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTA 179549 ||| || || | || || || | ||||| | ||||| ||||| ||||| ||||| Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 179550 TAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 179595 ||| ||||| || || ||||| || || || || |||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 183 bits (202), Expect = 4e-41 Identities = 232/319 (73%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 178961 TTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTT 179020 |||||||| | || |||||||| || |||||||| || || |||||||| || |||| | Sbjct 3708 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 3767 Query 179021 CACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTG 179080 | | | || |||||||| || || || ||||| || |||| | ||| || || | Sbjct 3768 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 3827 Query 179081 GTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTG 179140 || | ||||| ||||| || |||||||| || || | ||||| ||| | || ||||||| Sbjct 3828 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 3887 Query 179141 GTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTG 179200 | |||| | || | || | |||||| | | || | | ||||||||| |||| Sbjct 3888 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTG 3947 Query 179201 AGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCAC 179260 ||||||||||| || |||||| |||||||| || ||||| ||||||||| || || | Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 179261 CAGTCGCTGCTGCGAGTGC 179279 | || || ||||| | ||| Sbjct 4008 CTGTTGCAGCTGCTACTGC 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605554030270080