Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 224 1e-53
seq32757 183 4e-41
>seq39735
Length=4112
Score = 224 bits (248), Expect = 1e-53
Identities = 259/346 (75%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 179251 TACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGT 179310
|| || || || || || ||||| | ||| | ||| | |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 179311 TCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTC 179370
|| ||||| | ||||||||| || |||||||||||||| |||| |||| ||||||||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 179371 CAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTC 179430
||||| || |||||||||||||||||||| || || ||||| ||||| ||||| |||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 179431 GGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGA 179489
|| || || || ||| ||||||||| || | | || || | || | ||| || | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878
Query 179490 AACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTA 179549
||| || || | || || || | ||||| | ||||| ||||| ||||| |||||
Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938
Query 179550 TAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 179595
||| ||||| || || ||||| || || || || ||||||||||||
Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 183 bits (202), Expect = 4e-41
Identities = 232/319 (73%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 178961 TTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTT 179020
|||||||| | || |||||||| || |||||||| || || |||||||| || |||| |
Sbjct 3708 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 3767
Query 179021 CACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTG 179080
| | | || |||||||| || || || ||||| || |||| | ||| || || |
Sbjct 3768 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 3827
Query 179081 GTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTG 179140
|| | ||||| ||||| || |||||||| || || | ||||| ||| | || |||||||
Sbjct 3828 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 3887
Query 179141 GTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTG 179200
| |||| | || | || | |||||| | | || | | ||||||||| ||||
Sbjct 3888 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTG 3947
Query 179201 AGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCAC 179260
||||||||||| || |||||| |||||||| || ||||| ||||||||| || || |
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 179261 CAGTCGCTGCTGCGAGTGC 179279
| || || ||||| | |||
Sbjct 4008 CTGTTGCAGCTGCTACTGC 4026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605554030270080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |