Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq620679 114 2e-20 seq229824 87.8 2e-12 >seq620679 Length=2600 Score = 114 bits (126), Expect = 2e-20 Identities = 378/581 (65%), Gaps = 10/581 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || ||||| ||||||| || || ||||| || || || || Sbjct 1752 GCACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 1811 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| | || |||||||| ||||||||||| || ||| ||| | || || |||| Sbjct 1812 ACCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAGCTCCCCGAGAAGA 1870 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATG 39792 |||| ||||| || || || || || | || ||| || || || | | | Sbjct 1871 AGATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC--CGTC 1928 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| ||| | ||||| | || || ||| || ||||| || || || | || Sbjct 1929 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 1988 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||||| ||| || || ||||| | || || || | | || || ||||| Sbjct 1989 AAAGAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 2048 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| |||||||| ||||| || ||||| || | || || | | Sbjct 2049 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 2108 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || ||||| || ||| | || | ||| || || || || || ||||| Sbjct 2109 CTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGC 2168 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT- 40091 || || || | || || | || || | || || |||| || | | | ||||| Sbjct 2169 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 2228 Query 40092 -CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 | || |||| | ||| || || || || ||||| ||||||||||| ||||| Sbjct 2229 GCGCTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTC 2286 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 |||||||| | ||| || || | || || || || || || Sbjct 2287 TTGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327 >seq229824 Length=340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || |||||||| || || ||||| ||||||| || || ||||| || || || || Sbjct 259 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGA 200 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAA 39735 || ||||| | || |||||||| ||||||||||| || ||| ||| | || || ||||| Sbjct 199 CCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTCCCCGAGAAGAA 141 Query 39736 GATGCCTTCTAC 39747 ||| ||||| || Sbjct 140 GATCCCTTCCAC 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 681534030576240