Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq614642 96.9 3e-15 seq25161 96.9 3e-15 seq62158 95.1 1e-14 seq54597 95.1 1e-14 seq429140 93.3 4e-14 seq418407 93.3 4e-14 seq476667 89.7 4e-13 seq32509 89.7 4e-13 seq197473 86.0 5e-12 seq592805 82.4 6e-11 >seq614642 Length=11660 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 8378 GCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 8437 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || |||| ||||||||||| |||||| | ||||| ||||| || |||||||| Sbjct 8438 GAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 8497 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | || || || Sbjct 8498 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGGACTCCAC 8557 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || ||||| || |||||||| ||||| ||||| Sbjct 8558 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 8605 >seq25161 Length=2200 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || |||||||| || |||||||| || ||| ||| |||| || Sbjct 541 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTC-CGCCCGTCCTC 483 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | || || | ||||| ||||| || | ||||| || || Sbjct 482 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 423 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | |||||| | | |||||| || || || || | || Sbjct 422 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 363 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| || |||||||||||||| ||||| Sbjct 362 GCCCGTGAGGGTTTTCACAAAGATCTGCAT 333 >seq62158 Length=5977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||||||| || | |||| |||| |||||||| || |||||| | | Sbjct 748 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 807 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||||||||| ||||| || || | || || || || ||||||| || | | | Sbjct 808 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 867 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| || || || || ||||| || | || ||||| || |||||||| | Sbjct 868 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 927 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 928 AAATCTGCAT 937 >seq54597 Length=20763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||||||| || | |||| |||| |||||||| || |||||| | | Sbjct 12913 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 12972 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||||||||| ||||| || || | || || || || ||||||| || | | | Sbjct 12973 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 13032 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| || || || || ||||| || | || ||||| || |||||||| | Sbjct 13033 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 13092 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 13093 ATATCTGCAT 13102 >seq429140 Length=2933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || ||||| ||||| |||||||| || ||| ||| |||| || Sbjct 287 ACCAAGTGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGTGTA-CGCCCGTCCTC 345 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || || || | || || | ||||| || || || | ||||| || || Sbjct 346 GAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCGGGGGGAATTCCCTCCTTGTCTTG 405 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | |||| |||||| | | |||||| || || || || | || Sbjct 406 GATCTTTGCTTTGACATTGTCTATAGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTT 465 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || |||||||||||||| ||||| ||||| Sbjct 466 TCCTGTGAGGGTTTTCACAAAGATCTGCAT--CTGCT 500 >seq418407 Length=782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | || ||||| | || || || |||||||| ||||| || Sbjct 717 TGCCACCACGCAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAG 658 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | | || || ||||| || || || | ||||| | ||| || || || | Sbjct 657 CCAGGGTGTGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTG 598 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||||||| ||||| |||| | | || | ||||| | |||| Sbjct 597 GGATACCCTCTTTATCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAA 538 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||||| | ||| || || ||||| ||||||||||||||||| Sbjct 537 CCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 489 >seq476667 Length=529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || |||| || | ||||| || || || || || |||||||| |||||||| || Sbjct 303 CCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCA 244 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| | |||| || | ||||||||| || | ||||| | ||| ||||| || || Sbjct 243 AGAGTTCTTC-CGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 185 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| ||| | | || | || || | | ||| || Sbjct 184 AATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTGTCAATTGTATCAGAGCTTTCCAC 125 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| || ||||| || ||||||||||||||||| Sbjct 124 CTCCAATGTGATTGTTTTCCCAGTCAGGGTCTTCACAAAGATTTGCAT 77 >seq32509 Length=4583 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || ||||||||||| ||||| | Sbjct 1438 CCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTG-C 1496 Query 27081 ATGTTGCGCTCG-TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || || || ||||| ||||| || |||| | | ||| || || || || Sbjct 1497 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 1556 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| || || ||||| | |||| ||||| | | ||| || Sbjct 1557 AATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCAC 1616 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| || || || || |||||||||||||| Sbjct 1617 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAGATTTGCAT 1664 >seq197473 Length=365 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| | | | || |||| |||||||| || ||| Sbjct 344 GTCGACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCG 285 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||||||||| || || | ||||| || || ||||||| ||| Sbjct 284 GCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 225 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || | | ||||| || || || Sbjct 224 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTC 165 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 164 TTCACAAAGATCTGCAT 148 >seq592805 Length=13616 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||| || | || || || || || |||||||| ||| | Sbjct 516 CCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCC 457 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||| || | ||| |||||||| | || | | ||| |||||||| || Sbjct 456 AGGGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGA 397 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| || | | | || | ||||| | | ||||| Sbjct 396 ATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCAACC 337 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || || || || ||||||||||| |||||| Sbjct 336 TCGAGAGTGATGGTCTTCCCGGTAAGGGTCTTCACAAAGATCTGCATA 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421692592194192