Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq37849 100 4e-16 seq21555 91.5 2e-13 seq620679 89.7 6e-13 seq229824 84.2 3e-11 >seq37849 Length=6260 Score = 100 bits (110), Expect = 4e-16 Identities = 227/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTC 11538 |||||| ||||| | | ||||| || |||| |||||||| ||||| | | || Sbjct 3983 ATCAAGAATATCTGCCCTGTTAGTTGCTGCAA---CCACAATGATACCAGTGTTACCCTC 3927 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||| || |||||||| |||||||| || Sbjct 3926 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCTCC 3867 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| |||| | | ||| || || |||||||| ||||||| || ||||| Sbjct 3866 ---ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 3810 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || ||| |||||| || | | ||| ||||| || || | ||||| ||||| Sbjct 3809 GCAAGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACC 3750 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||||| || ||||| | | | ||| || || || ||| | |||||| Sbjct 3749 AACAAACATTTCAACAAACTCAGAACCTGAGATAGAGAAAAAAGGAACACCAGCTTCACC 3690 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || || || |||||||| || ||||| Sbjct 3689 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 3651 >seq21555 Length=2254 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| || |||||||| || | ||| |||||||| || || || |||||||||||| | Sbjct 316 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCC--A 259 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | ||| | || || ||||||||||||||||| || | ||| Sbjct 258 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACATAATG 199 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | ||||| | || | || || || ||||| || Sbjct 198 CA-GGGCGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTCC 140 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGG---GACATTTGATTC 11772 ||||||| ||||||||| | | || | ||| || ||| || | || | || Sbjct 139 CACAAACAGCTCCACAAACTCCGAAGCGGCACACGAGAAGAACGGCGTGCCA---GCCTC 83 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | ||| || || || ||||||||||| ||||| || Sbjct 82 ACCAGCAACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGG 41 >seq620679 Length=2600 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || |||||||| || || | || || |||||| ||||| ||||| | || Sbjct 1767 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCC 1826 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || |||||||| ||| ||||||||||| || ||||| || Sbjct 1827 GCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 1886 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG--AGCGAGACTTTGCATCAAACCATTTCATT 122847 || || || | | || || ||||| | |||| | || | |||||||| Sbjct 1887 GGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAG-----CCGTCGATCCATTTCAGG 1941 Query 122848 GCCCATTTCGCCTTCTTC 122865 ||||| | |||||| ||| Sbjct 1942 GCCCACTGCGCCTTTTTC 1959 >seq229824 Length=340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || |||||||| || || | || || ||||| ||||| ||||| | || Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || |||||||| ||| ||||||||||| || ||||| || Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG---CATCAAACCATTTCAT 122846 || || || | | || || ||||| || || | | || | |||||||| Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAA------AGTCTCGGAGCCGTCGATCCATTTCAG 72 Query 122847 TGCCCATTTCGCCTTCTTC 122865 ||||| | |||||| ||| Sbjct 71 GGCCCACTGCGCCTTTTTC 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623117916513600