Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 131 2e-25
seq229824 111 2e-19
>seq620679
Length=2600
Score = 131 bits (144), Expect = 2e-25
Identities = 358/539 (66%), Gaps = 21/539 (4%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| |||||||| | |||||| ||||| || |||||||| | | || || ||||||
Sbjct 1468 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 1527
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC---ACTCCAATCTGTTTGAGGAGA 129844
||||||||||||||| | || | ||| | || |||| | || ||
Sbjct 1528 CAATCAAATGGGTTCTGCACAT--CATACAGCTTCCCATACCCCAA-CGCACCCAGCAGC 1584
Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904
| ||| | |||| |||| ||||||| | |||| || |||||| || | | |
Sbjct 1585 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 1644
Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964
|| || | |||||| ||| |||| || |||| ||||| || || | ||||||||| |
Sbjct 1645 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 1704
Query 129965 TGAATGGTCTCC---GTGCCAGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAA 130019
| | | |||| ||| || | || | | | | | || || |||| | |
Sbjct 1705 TTCACGCGCTCCTCGGTG--AGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGA 1759
Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079
| || |||||| || || || || ||||| | || ||||||||| |||||| ||||
Sbjct 1760 AGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCA 1819
Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139
| | || ||||| || | ||| || ||||| || || || |||||||||||||| |
Sbjct 1820 TCAACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTT 1879
Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCAC 130198
|||| || ||||| || | || ||||| || |||| | | | || | |||
Sbjct 1880 CCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAT 1935
Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257
|||| |||||||||||||||||| ||| || |||| ||| | || || ||||||
Sbjct 1936 TTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAG 1994
>seq229824
Length=340
Score = 111 bits (122), Expect = 2e-19
Identities = 154/214 (72%), Gaps = 5/214 (2%)
Strand=Plus/Minus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
|||||| || || || || ||||| | || |||||||| |||||| ||||| | ||
Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
||||| || | ||| || ||||| || || || |||||||||||||| ||||| ||
Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126
Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 130205
||||| || | || ||||| || |||| ||| | || | ||| |||| |
Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGAGC----CGTCGATCCATTTCAGGG 70
Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239
||||||||||||||||| ||| || |||| |||
Sbjct 69 CCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 36
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613596207394960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |