Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq620679 131 2e-25 seq229824 111 2e-19 >seq620679 Length=2600 Score = 131 bits (144), Expect = 2e-25 Identities = 358/539 (66%), Gaps = 21/539 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 1468 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 1527 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC---ACTCCAATCTGTTTGAGGAGA 129844 ||||||||||||||| | || | ||| | || |||| | || || Sbjct 1528 CAATCAAATGGGTTCTGCACAT--CATACAGCTTCCCATACCCCAA-CGCACCCAGCAGC 1584 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 | ||| | |||| |||| ||||||| | |||| || |||||| || | | | Sbjct 1585 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 1644 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || | |||||| ||| |||| || |||| ||||| || || | ||||||||| | Sbjct 1645 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 1704 Query 129965 TGAATGGTCTCC---GTGCCAGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAA 130019 | | | |||| ||| || | || | | | | | || || |||| | | Sbjct 1705 TTCACGCGCTCCTCGGTG--AGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGA 1759 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || |||||| || || || || ||||| | || ||||||||| |||||| |||| Sbjct 1760 AGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCA 1819 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 | | || ||||| || | ||| || ||||| || || || |||||||||||||| | Sbjct 1820 TCAACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTT 1879 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCAC 130198 |||| || ||||| || | || ||||| || |||| | | | || | ||| Sbjct 1880 CCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAT 1935 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 |||| |||||||||||||||||| ||| || |||| ||| | || || |||||| Sbjct 1936 TTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAG 1994 >seq229824 Length=340 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| || || || || ||||| | || |||||||| |||||| ||||| | || Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || ||||| || || || |||||||||||||| ||||| || Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 130205 ||||| || | || ||||| || |||| ||| | || | ||| |||| | Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGAGC----CGTCGATCCATTTCAGGG 70 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 ||||||||||||||||| ||| || |||| ||| Sbjct 69 CCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613596207394960