Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq37849 127 2e-24
seq620679 98.7 1e-15
seq229824 89.7 6e-13
seq21555 89.7 6e-13
>seq37849
Length=6260
Score = 127 bits (140), Expect = 2e-24
Identities = 235/339 (69%), Gaps = 12/339 (4%)
Strand=Plus/Minus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615
|||||| ||||| | | || || || || | |||| ||||| || | | |||||
Sbjct 3983 ATCAAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 3924
Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675
||||||||| ||||||||||| || |||| || ||||| | ||||||||| ||
Sbjct 3923 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 3867
Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
|||| |||| | | ||| ||| || |||||||| ||||||| || || |||||
Sbjct 3866 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 3807
Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790
||| |||||| ||| |||| ||| ||||| || || || || || ||||||
Sbjct 3806 AGGTGCATTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCA 3749
Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849
|||||||| || ||||| | | | | | || | || || || ||| || ||||||
Sbjct 3748 ACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACC 3690
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||||| || || || |||||||| || || |||||
Sbjct 3689 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 3651
>seq620679
Length=2600
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857
|| || |||||| || | || || || || || || || ||||||||||| || ||||
Sbjct 1913 TTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTC 1854
Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917
||||| || | |||||| || ||||| || | ||||| ||||| |||||| ||||||
Sbjct 1853 TGCGCGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 1794
Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944
| ||||| || || || || ||||||
Sbjct 1793 TTGATCTCGCGAGATGAAGGCCTCCAC 1767
>seq229824
Length=340
Score = 89.7 bits (98), Expect = 6e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857
|| || ||||| || | || || || || || || || ||||||||||| || ||||
Sbjct 99 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTC 158
Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917
||||| || | |||||| || ||||| || | ||||| ||||| ||||| ||||||
Sbjct 159 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAG 218
Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944
| ||||| || || || || ||||||
Sbjct 219 TTGATCTCGCGAGATGAAGGCCTCCAC 245
>seq21555
Length=2254
Score = 89.7 bits (98), Expect = 6e-13
Identities = 190/280 (68%), Gaps = 8/280 (3%)
Strand=Plus/Minus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| || |||||||| ||||| | || |||||||| || |||| |||||||| |
Sbjct 316 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 259
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | ||| || || | | ||| | || |||||||||||||||||||| || | |||
Sbjct 258 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACATAATG 199
Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788
|| || ||||| | || ||||| | |||| || | | || ||||| |
Sbjct 198 CAGGG--CGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 141
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848
| ||||||| ||||||||| | | |||| ||| || ||| || || ||||
Sbjct 140 CCACAAACAGCTCCACAAACTCCGAAGCGGCACACGAGAAGAACGGCGTGCCAGCCTCAC 81
Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
| |||| ||| || || || || ||||| || ||||| ||
Sbjct 80 CAGCAACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGG 41
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578697032125840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |