Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq620679 154 2e-32 seq229824 109 6e-19 >seq620679 Length=2600 Score = 154 bits (170), Expect = 2e-32 Identities = 376/561 (67%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 2324 TTCCCGATTCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGG 2265 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| | || |||| | ||||| | | ||||| | || | || | Sbjct 2264 ACCGCCGAGGAGGTCGATCTCGACCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGC 2205 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 ||| |||| ||||||| ||||| ||||||||||| || || || || || | Sbjct 2204 GAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTC 2145 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 || ||| | | | | || ||||| |||||| | | ||||| || | |||||| Sbjct 2144 GAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTAC 2085 Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| ||| | ||| ||||||||||||| |||| ||| | |||| | Sbjct 2084 GGCTTCCAGATCGCG-ATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGAC 2026 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCG 59919 | |||| || |||| ||||| | |||| || || ||| | || || |||| | Sbjct 2025 CTACATCAAAGACTCGGACGAGAAATCCCGTCTCTTTCGGGCCGTCGACACCATCCCTTG 1966 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATTTGC 59977 | || |||| || | |||||| || | ||||| || || |||| | || || Sbjct 1965 C-GTCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCGGAGACT--TTCGC 1909 Query 59978 ACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGC 60037 | || || | || || || ||||||||||| ||||||||||| || ||||| || Sbjct 1908 GGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGC 1849 Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || || ||||| |||||||| || | |||||||| |||| ||||| |||||| |||| Sbjct 1848 GATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGAT 1789 Query 60098 TTCCCGGGACGAGGGCCTCCA 60118 || || || || |||||||| Sbjct 1788 CTCGCGAGATGAAGGCCTCCA 1768 >seq229824 Length=340 Score = 109 bits (120), Expect = 6e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || || || ||||||||||| ||||||||||| || ||||| || || || ||||| Sbjct 117 GCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATATTTTGGCTA 176 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 |||||||| || | |||||||| |||| |||||| |||||| |||| || || || || Sbjct 177 AAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAGTTGATCTCGCGAGATGAA 236 Query 60111 GGCCTCCA 60118 |||||||| Sbjct 237 GGCCTCCA 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544232826563040