Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq442060 91.5 2e-13 seq583926 87.8 2e-12 seq435098 87.8 2e-12 seq558064 86.0 7e-12 seq516263 86.0 7e-12 seq51387 86.0 7e-12 seq349392 82.4 8e-11 >seq442060 Length=1752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1752 CTGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1693 Query 79683 TTGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 1692 CTGAGCTATGAAAGCAA 1676 >seq583926 Length=620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 316 CTGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 257 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 256 CTGAGCTATGAAAGC 242 >seq435098 Length=649 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 401 CTGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 460 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 461 CTGAGCTATGAAAGC 475 >seq558064 Length=1258 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1164 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1105 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 1104 TGAGCTACGAGAGC 1091 >seq516263 Length=4349 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 426 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 367 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 366 TGAGCTATGAAAGC 353 >seq51387 Length=7531 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4919 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4978 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 4979 TGAGCTACGAGAGC 4992 >seq349392 Length=1751 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | ||||||| |||||||| |||||||||||||||||| ||||| Sbjct 1536 CTGCTCTCGTTGAGAGTCGATCTCAAGACCTCCCGATTACTAAACGGGTGCTCTAACCAA 1595 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 1596 CTGAGCTACGAGAGC 1610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542934267366800