Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq39735 208 9e-49 seq32757 163 3e-35 >seq39735 Length=4112 Score = 208 bits (230), Expect = 9e-49 Identities = 234/313 (75%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 176534 TTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTT 176593 ||||| | |||| ||| | ||||||||| || ||||| ||||||||||| || || | Sbjct 1671 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCT 1730 Query 176594 CAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCAT 176653 | ||||| |||||||| ||| ||||||||||||| ||||||||||| || |||||||||| Sbjct 1731 CTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCAT 1790 Query 176654 TCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAA 176713 | || ||||| || || || ||||| ||||| || || || ||| || ||||| || Sbjct 1791 TTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTT 1850 Query 176714 GTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTT 176773 | | || || ||| | | || || || || ||||| ||||| || | |||| Sbjct 1851 CTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 1910 Query 176774 ACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTC 176833 ||| |||||| ||||| ||||| || || || || ||||| || || ||||| ||||| | Sbjct 1911 ACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAGTTTGGCC 1970 Query 176834 GTCTTATCTTCCA 176846 | | |||||||| Sbjct 1971 GATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 163 bits (180), Expect = 3e-35 Identities = 231/323 (72%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| ||||| || || ||||| || |||||||| ||||| || Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | |||||| |||| || |||||||| || || || || || | |||| | || Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| |||||||| |||||||| || | ||||| |||||| | ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTAC--- 176442 || || || || || | || |||| | |||||| | | ||| | ||||| | Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAT 3937 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | | || || ||||| |||||||| ||||||| Sbjct 3938 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 3997 Query 176503 TACTCTGCACCAGTATCTGCAGC 176525 || || || || || |||||| Sbjct 3998 TATTCAGCTCCTGT---TGCAGC 4017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 598772312805120