Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq39735 224 1e-53 seq619791 154 2e-32 seq65649 147 3e-30 seq512045 138 1e-27 seq66639 95.1 2e-14 seq545533 93.3 5e-14 seq527658 91.5 2e-13 seq15593 82.4 1e-10 >seq39735 Length=4112 Score = 224 bits (248), Expect = 1e-53 Identities = 256/344 (74%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 190055 TATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGT 190114 |||||||| || || | || || ||| | ||| | | |||||| ||||||| || Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 190115 TCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTC 190174 || ||||| ||||||||| |||| ||||| ||||| |||||||||||| |||||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 190175 CAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGTATGTTT 190234 ||||| || || || ||||||||||||||||| || ||| |||||| || ||| | ||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 190235 GGTGGAGCATTATTCTCTGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAA 190294 || || | ||||| ||| ||||||||||| | ||||| ||| | | ||||| ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 190295 ACAACTGGTTTAGAGTCACAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACATAC 190354 || || | || || || | ||||||| || || ||||| |||||||| || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 190355 AACATAGTAGCTGCTCATGGTTACTTTGGTAGACTTATCTTCCA 190398 || || ||||| ||||||||||| ||||| || | |||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 >seq619791 Length=4002 Score = 154 bits (170), Expect = 2e-32 Identities = 238/332 (72%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 184610 AACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTTGAGAGACTTCTTATGGTCACAG 184669 ||||||| ||| |||| ||||| || ||||| ||| | | || ||||||||| ||||| Sbjct 2704 AACTTTGAGCAGGGTTCCATTACTATTAATGGGTGGCTCCGCGATTTCTTATGGGCACAG 2763 Query 184670 TCAAGTCAAGTTCT-CAATAGTTATGGACAAGACATCAGCA-TGTATGGTTTGCTATTTC 184727 || |||| | || | || | ||| ||| | | | ||||| | | |||| Sbjct 2764 ACATCCTAAGTAATTCAGTCGT-ACGGATCTT-CATTATCTGTATATGGCCTTTT-TTTC 2820 Query 184728 TT-GGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTATGGAGTGGTAGAGGATAC 184786 || || || |||||||||||||| || ||||| ||||| |||| | || | || || Sbjct 2821 TTAGGCGCTCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAACGGACGTGGTTAT 2880 Query 184787 TGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAATTAAAACTTGCACCTACC 184846 |||||||| | || || || |||| |||||| ||||| ||||||||| |||| ||| | Sbjct 2881 TGGCAAGAACTTATTGAATCCATTGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCT 2940 Query 184847 ATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTGCACACTTCTTA 184906 | | | || |||| || ||| |||||||||||||| ||||| | || | | | Sbjct 2941 ACTTAGCCTTGAGCCTTGAGTATTGTCCAAGGACGTGCTGTAGGAGTAACCCATTACCTT 3000 Query 184907 CTTGGAGGTATTGCCACAACATGGGCATTCTT 184938 || || || ||||||||||||||||| ||||| Sbjct 3001 CTGGGTGGAATTGCCACAACATGGGCGTTCTT 3032 >seq65649 Length=7494 Score = 147 bits (162), Expect = 3e-30 Identities = 239/338 (71%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 184610 AACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTTGAGAGACTTCTTATGGTCACAG 184669 |||||||| |||||||| ||||| || |||| ||| | | || ||||||||| |||| Sbjct 5018 AACTTTGCGCAGAGTTCCATTACTATTAATGAGTGGCTCCGCGATTTCTTATGGGCACAA 5077 Query 184670 TCAAGTCAAGTTCT-CAATAGTTATGGA-CAAGAC-ATCAGCATGTATGGTTTGCTATTT 184726 || ||||| | || | || ||||| | | ||| |||| | ||| | || Sbjct 5078 ACATCCCAAGTAATTCAGTCGT-ATGGATCTTCATTATCTGCATATGACATTT--TTTTC 5134 Query 184727 CTTGGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTATGGAGTGGTAGAGGATAC 184786 || | || |||||||||||||| || ||||| ||||| |||| | || | || || Sbjct 5135 CTAAGCGCTCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAACGGACGTGGTTAT 5194 Query 184787 TGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAATTAAAACTTGCACCTACC 184846 |||||| | | || || || |||| ||| || ||||| ||||||||| |||| ||| | Sbjct 5195 TGGCAATAACTTATTGAATCCATTGTTTGAGCTCATAATAAATTAAAAGTTGCTCCTGCT 5254 Query 184847 ATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTGCACACTTCTTA 184906 | ||| | |||| || ||| |||||||||| ||| ||||| | || | | | Sbjct 5255 ACTCAGCATTGAGCCTTGAGTATTGTCCAAGGACGTGTTGTAGGAGTAACCCATTACCTT 5314 Query 184907 CTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTGC 184944 || || || |||||||||||||| || |||||||| || Sbjct 5315 CTGGGTGGAATTGCCACAACATGAGCGTTCTTCTTAGC 5352 >seq512045 Length=3528 Score = 138 bits (152), Expect = 1e-27 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 186887 CCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTT 186946 || ||||| ||||||| | | || || ||||| ||||||||||| ||||| || | ||| Sbjct 798 CCTTTTGGAATGAATAGTTTATCGGTCTGGGCGTGGATGTTCTTATTTGGACACCTTGTT 857 Query 186947 TGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAG 187006 ||||| || |||||||||||| | ||||||||| | ||||||||||| || || ||||| Sbjct 858 TGGGCTACTGGATTTATGTTCTTAATTTCTTGGCGGGGTTATTGGCAGGAATTGATTGAA 917 Query 187007 ACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAAT 187045 ||| | |||||||| ||| || | || || |||| ||| Sbjct 918 ACTTTAGCTTGGGCTCATGAACGCACACCTTTAGCTAAT 956 >seq66639 Length=5138 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGAT 182557 || || || ||||||| || || || || || |||| |||| ||| | ||| Sbjct 1575 GTAAAGATTTATGATATGTGTATAGGGTGTACTCAATTTGTGCGAGCTAACC-----GAT 1521 Query 182558 GTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGA 182617 |||||||||| | | |||||||||| || ||| | |||||||| |||| | || ||| Sbjct 1520 GTATTAGAAACGATAGCTTGGGATGGATGTAAAACTAAGCAAATCGCTTATGCTCCAAGA 1461 Query 182618 ACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTAAGT 182677 | ||||| |||| || ||||||||||||||| | | | | ||||| || || | | Sbjct 1460 ATAGAGGACTGTG--GGTTGTAAGAGATGTGAATCTGTCTATTTAACAGATTTCTTGACT 1403 Query 182678 ATTCGTGTTTACTT 182691 |||||||||| || Sbjct 1402 GTTCGTGTTTATTT 1389 >seq545533 Length=2649 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 186507 TACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTA 186566 || |||||||||||| || || || |||| |||||||||||| || || |||||||| | Sbjct 257 TAACAATAGGACCTGGAGACTTCTTGGTTCTTCATGCTATTGCTCTAGGTTTACATACAA 316 Query 186567 CAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAA 186612 | || || ||| |||| || ||||| |||||||| | ||||| || Sbjct 317 CTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGTGGTTCCAA 362 >seq527658 Length=8787 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 185097 AGTTATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGG 185156 |||||| | || ||| |||||| | || ||||| || | ||||| || ||||| || Sbjct 6144 AGTTAT-TAGAATATT-TTTGCTTCTCATTTTGGGCAATTAGCAATAATTTTTCTGTGTA 6201 Query 185157 TTGCAGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAGACC 185216 | | || ||| | ||||| |||| |||||||| || ||||| | ||| | | | Sbjct 6202 CTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGGCATGGGTACAAAATC 6261 Query 185217 CACAACATGTGATACCTATAGCACATAGAATATGGGATCCTCATTTTGGTCAAGGTGCAA 185276 |||||| | |||||| || || ||| ||||||||||||||||||||| || | Sbjct 6262 TTTTACATGTAAGACCTATTGCTCACGCAATTTGGGATCCTCATTTTGGTCAACCAGCTA 6321 Query 185277 CAGATGCATACACACAGGCAGGTTCTACTTTTCCTGTGAACAGATTGTATTCTGGACTGT 185336 | | || | || | | |||| || | || ||||| | | |||||||| | | Sbjct 6322 TATAGGCTTTTACTCGCGGAGGTGCTCTTGGCCCGGTGAATATAGCTTATTCTGGTGTTT 6381 Query 185337 ATCATTGGTGGTACACAGTTGG 185358 |||| |||||||| || |||| Sbjct 6382 ATCAGTGGTGGTATACGATTGG 6403 >seq15593 Length=2423 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 186908 TCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTC 186967 || || ||||| ||||||||||| ||||| ||| | |||||||| || |||||||||||| Sbjct 1223 TCGGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTC 1282 Query 186968 CTTATTTCTTGG-AGAGGTTAT 186988 | ||||||||| | |||||| Sbjct 1283 TTAATTTCTTGGCGGTGGTTAT 1304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626486550516560