Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_028955.1
Length=197361
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 224 1e-53
seq619791 154 2e-32
seq65649 147 3e-30
seq512045 138 1e-27
seq66639 95.1 2e-14
seq545533 93.3 5e-14
seq527658 91.5 2e-13
seq15593 82.4 1e-10
>seq39735
Length=4112
Score = 224 bits (248), Expect = 1e-53
Identities = 256/344 (74%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 190055 TATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGT 190114
|||||||| || || | || || ||| | ||| | | |||||| ||||||| ||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 190115 TCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTC 190174
|| ||||| ||||||||| |||| ||||| ||||| |||||||||||| ||||||||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 190175 CAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGTATGTTT 190234
||||| || || || ||||||||||||||||| || ||| |||||| || ||| | |||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 190235 GGTGGAGCATTATTCTCTGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAA 190294
|| || | ||||| ||| ||||||||||| | ||||| ||| | | ||||| |||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 190295 ACAACTGGTTTAGAGTCACAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACATAC 190354
|| || | || || || | ||||||| || || ||||| |||||||| ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 190355 AACATAGTAGCTGCTCATGGTTACTTTGGTAGACTTATCTTCCA 190398
|| || ||||| ||||||||||| ||||| || | ||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983
>seq619791
Length=4002
Score = 154 bits (170), Expect = 2e-32
Identities = 238/332 (72%), Gaps = 6/332 (2%)
Strand=Plus/Plus
Query 184610 AACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTTGAGAGACTTCTTATGGTCACAG 184669
||||||| ||| |||| ||||| || ||||| ||| | | || ||||||||| |||||
Sbjct 2704 AACTTTGAGCAGGGTTCCATTACTATTAATGGGTGGCTCCGCGATTTCTTATGGGCACAG 2763
Query 184670 TCAAGTCAAGTTCT-CAATAGTTATGGACAAGACATCAGCA-TGTATGGTTTGCTATTTC 184727
|| |||| | || | || | ||| ||| | | | ||||| | | ||||
Sbjct 2764 ACATCCTAAGTAATTCAGTCGT-ACGGATCTT-CATTATCTGTATATGGCCTTTT-TTTC 2820
Query 184728 TT-GGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTATGGAGTGGTAGAGGATAC 184786
|| || || |||||||||||||| || ||||| ||||| |||| | || | || ||
Sbjct 2821 TTAGGCGCTCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAACGGACGTGGTTAT 2880
Query 184787 TGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAATTAAAACTTGCACCTACC 184846
|||||||| | || || || |||| |||||| ||||| ||||||||| |||| ||| |
Sbjct 2881 TGGCAAGAACTTATTGAATCCATTGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCT 2940
Query 184847 ATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTGCACACTTCTTA 184906
| | | || |||| || ||| |||||||||||||| ||||| | || | | |
Sbjct 2941 ACTTAGCCTTGAGCCTTGAGTATTGTCCAAGGACGTGCTGTAGGAGTAACCCATTACCTT 3000
Query 184907 CTTGGAGGTATTGCCACAACATGGGCATTCTT 184938
|| || || ||||||||||||||||| |||||
Sbjct 3001 CTGGGTGGAATTGCCACAACATGGGCGTTCTT 3032
>seq65649
Length=7494
Score = 147 bits (162), Expect = 3e-30
Identities = 239/338 (71%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 184610 AACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTTGAGAGACTTCTTATGGTCACAG 184669
|||||||| |||||||| ||||| || |||| ||| | | || ||||||||| ||||
Sbjct 5018 AACTTTGCGCAGAGTTCCATTACTATTAATGAGTGGCTCCGCGATTTCTTATGGGCACAA 5077
Query 184670 TCAAGTCAAGTTCT-CAATAGTTATGGA-CAAGAC-ATCAGCATGTATGGTTTGCTATTT 184726
|| ||||| | || | || ||||| | | ||| |||| | ||| | ||
Sbjct 5078 ACATCCCAAGTAATTCAGTCGT-ATGGATCTTCATTATCTGCATATGACATTT--TTTTC 5134
Query 184727 CTTGGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTATGGAGTGGTAGAGGATAC 184786
|| | || |||||||||||||| || ||||| ||||| |||| | || | || ||
Sbjct 5135 CTAAGCGCTCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAACGGACGTGGTTAT 5194
Query 184787 TGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAATTAAAACTTGCACCTACC 184846
|||||| | | || || || |||| ||| || ||||| ||||||||| |||| ||| |
Sbjct 5195 TGGCAATAACTTATTGAATCCATTGTTTGAGCTCATAATAAATTAAAAGTTGCTCCTGCT 5254
Query 184847 ATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTGCACACTTCTTA 184906
| ||| | |||| || ||| |||||||||| ||| ||||| | || | | |
Sbjct 5255 ACTCAGCATTGAGCCTTGAGTATTGTCCAAGGACGTGTTGTAGGAGTAACCCATTACCTT 5314
Query 184907 CTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTGC 184944
|| || || |||||||||||||| || |||||||| ||
Sbjct 5315 CTGGGTGGAATTGCCACAACATGAGCGTTCTTCTTAGC 5352
>seq512045
Length=3528
Score = 138 bits (152), Expect = 1e-27
Identities = 126/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 186887 CCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTT 186946
|| ||||| ||||||| | | || || ||||| ||||||||||| ||||| || | |||
Sbjct 798 CCTTTTGGAATGAATAGTTTATCGGTCTGGGCGTGGATGTTCTTATTTGGACACCTTGTT 857
Query 186947 TGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAG 187006
||||| || |||||||||||| | ||||||||| | ||||||||||| || || |||||
Sbjct 858 TGGGCTACTGGATTTATGTTCTTAATTTCTTGGCGGGGTTATTGGCAGGAATTGATTGAA 917
Query 187007 ACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAAT 187045
||| | |||||||| ||| || | || || |||| |||
Sbjct 918 ACTTTAGCTTGGGCTCATGAACGCACACCTTTAGCTAAT 956
>seq66639
Length=5138
Score = 95.1 bits (104), Expect = 2e-14
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGAT 182557
|| || || ||||||| || || || || || |||| |||| ||| | |||
Sbjct 1575 GTAAAGATTTATGATATGTGTATAGGGTGTACTCAATTTGTGCGAGCTAACC-----GAT 1521
Query 182558 GTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGA 182617
|||||||||| | | |||||||||| || ||| | |||||||| |||| | || |||
Sbjct 1520 GTATTAGAAACGATAGCTTGGGATGGATGTAAAACTAAGCAAATCGCTTATGCTCCAAGA 1461
Query 182618 ACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTAAGT 182677
| ||||| |||| || ||||||||||||||| | | | | ||||| || || | |
Sbjct 1460 ATAGAGGACTGTG--GGTTGTAAGAGATGTGAATCTGTCTATTTAACAGATTTCTTGACT 1403
Query 182678 ATTCGTGTTTACTT 182691
|||||||||| ||
Sbjct 1402 GTTCGTGTTTATTT 1389
>seq545533
Length=2649
Score = 93.3 bits (102), Expect = 5e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 186507 TACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTA 186566
|| |||||||||||| || || || |||| |||||||||||| || || |||||||| |
Sbjct 257 TAACAATAGGACCTGGAGACTTCTTGGTTCTTCATGCTATTGCTCTAGGTTTACATACAA 316
Query 186567 CAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAA 186612
| || || ||| |||| || ||||| |||||||| | ||||| ||
Sbjct 317 CTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGTGGTTCCAA 362
>seq527658
Length=8787
Score = 91.5 bits (100), Expect = 2e-13
Identities = 179/262 (68%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 185097 AGTTATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGG 185156
|||||| | || ||| |||||| | || ||||| || | ||||| || ||||| ||
Sbjct 6144 AGTTAT-TAGAATATT-TTTGCTTCTCATTTTGGGCAATTAGCAATAATTTTTCTGTGTA 6201
Query 185157 TTGCAGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAGACC 185216
| | || ||| | ||||| |||| |||||||| || ||||| | ||| | | |
Sbjct 6202 CTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGGCATGGGTACAAAATC 6261
Query 185217 CACAACATGTGATACCTATAGCACATAGAATATGGGATCCTCATTTTGGTCAAGGTGCAA 185276
|||||| | |||||| || || ||| ||||||||||||||||||||| || |
Sbjct 6262 TTTTACATGTAAGACCTATTGCTCACGCAATTTGGGATCCTCATTTTGGTCAACCAGCTA 6321
Query 185277 CAGATGCATACACACAGGCAGGTTCTACTTTTCCTGTGAACAGATTGTATTCTGGACTGT 185336
| | || | || | | |||| || | || ||||| | | |||||||| | |
Sbjct 6322 TATAGGCTTTTACTCGCGGAGGTGCTCTTGGCCCGGTGAATATAGCTTATTCTGGTGTTT 6381
Query 185337 ATCATTGGTGGTACACAGTTGG 185358
|||| |||||||| || ||||
Sbjct 6382 ATCAGTGGTGGTATACGATTGG 6403
>seq15593
Length=2423
Score = 82.4 bits (90), Expect = 1e-10
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 186908 TCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTC 186967
|| || ||||| ||||||||||| ||||| ||| | |||||||| || ||||||||||||
Sbjct 1223 TCGGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTC 1282
Query 186968 CTTATTTCTTGG-AGAGGTTAT 186988
| ||||||||| | ||||||
Sbjct 1283 TTAATTTCTTGGCGGTGGTTAT 1304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626486550516560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |