Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq581596 107 1e-18
seq36855 98.7 7e-16
seq213125 89.7 4e-13
seq25161 89.7 4e-13
>seq581596
Length=910
Score = 107 bits (118), Expect = 1e-18
Identities = 165/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| |||||||| || ||||||||||| || ||| | || || |||||| |
Sbjct 646 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 587
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || ||||| || ||| ||| || ||||| || ||| |||| ||
Sbjct 586 TGATACAATTGACAAT--GTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGAT 529
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965
||||| || | || ||||| || ||||| ||||| || | | | | |||| | |||||
Sbjct 528 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTG-CAGATTA 470
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| ||||| || || ||||| |||||| | ||| ||||||| ||
Sbjct 469 CAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGTCTGCGTGGTGG 419
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| |||||||| ||| | || |||||| |||||| | || || |||||| |
Sbjct 418 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 359
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || | ||| |||| ||| || ||||||||||| || | ||
Sbjct 358 AGACACAATTGATAATA--TCAAGGCAAAGATTCAGGACAAAGAAGGCATTTCCCCAGAC 301
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || | || ||||| ||||| || | || |||| | | |||| ||||||
Sbjct 300 CAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGACGGTAGGACACTGTCAGATTAC 241
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || || ||| ||| |||||||||| | ||| | ||||| ||
Sbjct 240 AACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 191
>seq36855
Length=2596
Score = 98.7 bits (108), Expect = 7e-16
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| |||||||| || ||||||||||| || ||| | || || |||||| |
Sbjct 232 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 173
Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || ||||| || ||| ||| || ||||| || ||| |||| ||
Sbjct 172 TGATACAATTGACAAT--GTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGAT 115
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965
||||| || | || ||| | || ||||| ||||| || | | | | |||| | || ||
Sbjct 114 CAGCAGAGGCTCATCTTTACAGGTAAACAGTTGGAGGATGGAAGAACTCTTG-CAGACTA 56
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| ||||| || || ||||| |||||| | ||| ||||||| ||
Sbjct 55 CAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGTCTGCGTGGTGG 5
>seq213125
Length=352
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/229 (69%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||||||||| ||| | ||||| || || || || || || || ||| |
Sbjct 16 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTATGGAGGTGGAGAGCTCT 75
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| |||||| || || || || || ||| | ||| ||| |
Sbjct 76 GATACCATTGACAAT--GTCAAAGCCAAGATTCAAGATAAGGAGGGTATCCCGCCGGATC 133
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| |||| || ||||||||||| || ||||| || | || | ||| |||||| |
Sbjct 134 AGCAAAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCG-AACTTTGGCGATTATA 192
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||| |||||| || |||| | ||| | ||| | ||||| ||
Sbjct 193 ATATCCAGAAAGAGTCTACCCTGCACCTTGTTCTCCGTCTCCGTGGTGG 241
>seq25161
Length=2200
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| || ||||| || || ||||||||||| || || | || || |||||| |
Sbjct 788 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 847
Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || ||||| ||||| |||||| ||||| || ||| | || ||
Sbjct 848 TGATACAATTGACAAT--GTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGAT 905
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965
||||| || | || ||||| || ||||| ||||| |||| | | | |||| | || ||
Sbjct 906 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTG-CAGACTA 964
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| ||||| || || ||||| |||||| | || ||||||| ||
Sbjct 965 CAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 1015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 353147539762482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |