Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq468900 116 3e-21 seq614642 102 7e-17 seq597173 102 7e-17 seq25161 95.1 1e-14 seq467159 91.5 1e-13 seq476667 89.7 4e-13 seq62569 89.7 4e-13 seq30955 89.7 4e-13 seq581596 87.8 2e-12 seq54869 86.0 5e-12 >seq468900 Length=687 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || ||||| ||||| ||||| ||||| | || || Sbjct 354 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTC 295 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| | Sbjct 294 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-T 236 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | | | | ||| | | | || || |||||||| || | |||||| | | Sbjct 235 GAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCT 176 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || || |||||||||| Sbjct 175 TGCCGGTGAGGGTTTTCACGAAAATTTGCATCT 143 >seq614642 Length=11660 Score = 102 bits (112), Expect = 7e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 8390 GCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCC 8449 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || |||||||| || || || || || ||||||||||| | || | || ||| || Sbjct 8450 GTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 8509 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || || | | | | || ||| |||||||| |||| |||||| Sbjct 8510 GTCTTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGGACTCCACCTCCAACGTGAT 8569 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | || ||||| || ||||| || ||||| |||||||| |||||| Sbjct 8570 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTGACGCCG 8615 >seq597173 Length=998 Score = 102 bits (112), Expect = 7e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||| ||||| || || ||||| | || |||||||| ||||| ||||| Sbjct 3 CTCCTTCTGGATATTGTAATCAGCTAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAA 62 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | | ||| |||||| ||| | | | | | ||| Sbjct 63 GATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC-TGAATCTTGGCCTTAACGT 121 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || |||||||| || | |||||| | || || || || ||||| | Sbjct 122 TGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCA 181 Query 39272 CAAAGATTTGCATCT 39286 | || |||||||||| Sbjct 182 CGAAAATTTGCATCT 196 >seq25161 Length=2200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| ||||| ||||||||||| || || | || || Sbjct 770 CACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTC 711 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| Sbjct 710 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTG 651 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||||| ||| || |||| ||||| | || Sbjct 650 GATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCTCCAATGTGATGGTCTT 591 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| ||||| Sbjct 590 CCCTGTGAGAGTCTTAACAAAGATCTGCAT 561 >seq467159 Length=2775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || ||||| || || ||||| || || || |||| || ||||| ||||| || || Sbjct 1892 TCCTTCTGTATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 1833 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 1832 ATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 1774 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| || Sbjct 1773 GTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCAC 1714 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 1713 GAAGATCTGCAT 1702 >seq476667 Length=529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || || || ||||| |||| | |||| || | |||||| || ||||| Sbjct 267 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 208 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | |||||| || | ||| | | ||| |||||| ||| || || || | | | Sbjct 207 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT-TGCTTTAACATT 149 Query 39214 GCCACC-GTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | || ||||| ||| ||||| |||| ||||| |||| || ||||| || || Sbjct 148 GTCAATTGTATCAGAGCTT---TCCACCTCCAATGTGATTGTTTTCCCAGTCAGGGTCTT 92 Query 39270 AACAAAGATTTGCAT 39284 |||||||||||||| Sbjct 91 CACAAAGATTTGCAT 77 >seq62569 Length=7807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 1091 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1032 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 1031 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 973 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| | Sbjct 972 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 913 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 912 CGAAGATCTGCAT 900 >seq30955 Length=2588 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 1242 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1301 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 1302 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 1360 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| | Sbjct 1361 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 1420 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 1421 CGAAGATCTGCAT 1433 >seq581596 Length=910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||||||||| ||||| ||||| || || || || | || || Sbjct 664 CACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGCGTACGGCCATCCTC 723 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| | Sbjct 724 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC-T 782 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || |||| | | | || || ||| ||| || |||| ||||| Sbjct 783 GAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCT---CTCAACCTCCAATGTGATGG 839 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 840 TCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 873 >seq54869 Length=20101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || ||||| || || ||||| || || | Sbjct 4183 CGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCTGCAAGAGTGCGACCA 4124 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || ||||| || || | ||||||||| | || | || ||| ||| Sbjct 4123 TCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTG 4064 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| | | || |||| | | | ||||| ||| || |||| ||||| Sbjct 4063 TCC-TGAATCTTTGCCTTGACATTGTCAATTGTATCAGAACTCTCAACCTCCAAGGTGAT 4005 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || |||||||||||||| Sbjct 4004 TGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 3969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || ||||| || || ||||| || || | Sbjct 3955 CGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCTGCAAGAGTGCGACCA 3896 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || ||||| || || | ||||||||| | || | || ||| ||| Sbjct 3895 TCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTG 3836 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACT--CCACGTCCACCGTG 39246 ||| ||| | | || |||| | | | ||||| | ||| | || |||| ||| Sbjct 3835 TCC-TGAATCTTTGCCTTGACATTATCAATTGTATC--TGAACTTTCAACCTCCAAGGTG 3779 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| || || || || |||||||||||||| Sbjct 3778 ATTGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 3741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426268613530958