Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq620679 127 2e-24 >seq620679 Length=2600 Score = 127 bits (140), Expect = 2e-24 Identities = 375/573 (65%), Gaps = 5/573 (1%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 ||||| || || || || | ||||| |||| || | |||| ||||| || || || | Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTC-GCGAGATCAACTCGTTCGAGAAGGTCAG 1811 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| || || | |||||||||||||||||| ||| || ||| || ||||| Sbjct 1812 ACCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAA 1871 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||| ||| ||| || || || | ||| | |||| | || | | | | Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGT-CT--CCGAGCCGTC 1928 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||||| | ||||| | || |||||| ||||| || || |||| | || Sbjct 1929 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 1988 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 ||| | ||| || | ||||| || || || || | || ||||| ||||| Sbjct 1989 AAAGAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 2048 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || || || || || || ||||| || ||||| ||| | || || | || Sbjct 2049 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 2108 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || || || || ||| | | | || ||| || || ||||| ||| || Sbjct 2109 CTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGC 2168 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 || || || | || |||| || |||| || ||| | || | || ||| |||||| Sbjct 2169 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 2228 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | || |||| | ||| || || || | ||||| |||||||| || || || || Sbjct 2229 GCGCTGGTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTT 2288 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||||| ||| || || || ||||||||||| Sbjct 2289 GTACATCTCCCAGATCTCCGGGTACTGAATCGG 2321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423791655416678