Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 127 2e-24
>seq620679
Length=2600
Score = 127 bits (140), Expect = 2e-24
Identities = 375/573 (65%), Gaps = 5/573 (1%)
Strand=Plus/Plus
Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606
||||| || || || || | ||||| |||| || | |||| ||||| || || || |
Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTC-GCGAGATCAACTCGTTCGAGAAGGTCAG 1811
Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666
|| ||||| || || | |||||||||||||||||| ||| || ||| || |||||
Sbjct 1812 ACCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAA 1871
Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726
|| ||||| ||| ||| || || || | ||| | |||| | || | | | |
Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGT-CT--CCGAGCCGTC 1928
Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786
|||||||| | ||||| | || |||||| ||||| || || |||| | ||
Sbjct 1929 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 1988
Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846
||| | ||| || | ||||| || || || || | || ||||| |||||
Sbjct 1989 AAAGAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 2048
Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906
|| || || || || || || || ||||| || ||||| ||| | || || | ||
Sbjct 2049 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 2108
Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966
|| || || || || ||| | | | || ||| || || ||||| ||| ||
Sbjct 2109 CTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGC 2168
Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026
|| || || | || |||| || |||| || ||| | || | || ||| ||||||
Sbjct 2169 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 2228
Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086
| || |||| | ||| || || || | ||||| |||||||| || || || ||
Sbjct 2229 GCGCTGGTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTT 2288
Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGG 5119
|||||| ||| || || || |||||||||||
Sbjct 2289 GTACATCTCCCAGATCTCCGGGTACTGAATCGG 2321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423791655416678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |