Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 100 4e-16
seq587754 95.1 2e-14
>seq620679
Length=2600
Score = 100 bits (110), Expect = 4e-16
Identities = 374/579 (65%), Gaps = 8/579 (1%)
Strand=Plus/Plus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| || || || || || ||||||||||||| || || ||||| || || || ||
Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748
|| ||||| | || |||||||| ||||||||||| | ||| ||| | || || |||||
Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 1871
Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808
|| ||||| || ||||| || || | || ||| || || | | | ||
Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 1931
Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868
||| | | ||||| | ||||||||| || ||||| || || || | || |||
Sbjct 1932 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAA 1991
Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928
|||| | ||| || || ||||| | || || || | | || || ||||| ||
Sbjct 1992 GAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 2051
Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988
|| || ||||| ||||| || ||||| || ||||| || | || || | | |||
Sbjct 2052 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 2111
Query 46989 TACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047
||||| | || | | ||| | | | |||||| || || || || || || |
Sbjct 2112 GACCTC-CTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGA 2170
Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT--C 47105
| || || | || || | || || | || || ||| || || | | ||||| |
Sbjct 2171 AGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGC 2230
Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165
|| |||| | ||| || || || || |||||||| |||||||| || || ||
Sbjct 2231 GCTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTT 2288
Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204
||||| | ||| || || | || || ||||| || ||
Sbjct 2289 GTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327
>seq587754
Length=890
Score = 95.1 bits (104), Expect = 2e-14
Identities = 125/170 (74%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|||||||||||| | || |||| | |||||||| || ||||| || |||| ||
Sbjct 483 CTCTCTTTCATAACGAGTGTATAGCTCTTCAAATTTTTCACCCCAGCAGTCTGCCAACCC 424
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610
||| | ||||| ||||| | |||||||| || |||| | | || ||| | |||||| |
Sbjct 423 TGGAGACTCATTAGGACAAAATAATGACCAATCTCCAT-TGCTTTCAACTCTTTTCATGA 365
Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660
| |||||||| | ||| |||||| ||| ||||| || | ||| |||||
Sbjct 364 ACAGATCAGGCACCCAAAGAGCATAAAAAAGATCACGAGCTCT--GTTCT 317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707355991317120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |