Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq620679 100 4e-16 seq587754 95.1 2e-14 >seq620679 Length=2600 Score = 100 bits (110), Expect = 4e-16 Identities = 374/579 (65%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || || ||||||||||||| || || ||||| || || || || Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| | || |||||||| ||||||||||| | ||| ||| | || || ||||| Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 1871 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || ||||| || ||||| || || | || ||| || || | | | || Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 1931 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| | | ||||| | ||||||||| || ||||| || || || | || ||| Sbjct 1932 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAA 1991 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 |||| | ||| || || ||||| | || || || | | || || ||||| || Sbjct 1992 GAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 2051 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 || || ||||| ||||| || ||||| || ||||| || | || || | | ||| Sbjct 2052 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 2111 Query 46989 TACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 ||||| | || | | ||| | | | |||||| || || || || || || | Sbjct 2112 GACCTC-CTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGA 2170 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT--C 47105 | || || | || || | || || | || || ||| || || | | ||||| | Sbjct 2171 AGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGC 2230 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 || |||| | ||| || || || || |||||||| |||||||| || || || Sbjct 2231 GCTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTT 2288 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| | ||| || || | || || ||||| || || Sbjct 2289 GTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327 >seq587754 Length=890 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | || |||| | |||||||| || ||||| || |||| || Sbjct 483 CTCTCTTTCATAACGAGTGTATAGCTCTTCAAATTTTTCACCCCAGCAGTCTGCCAACCC 424 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| | ||||| ||||| | |||||||| || |||| | | || ||| | |||||| | Sbjct 423 TGGAGACTCATTAGGACAAAATAATGACCAATCTCCAT-TGCTTTCAACTCTTTTCATGA 365 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660 | |||||||| | ||| |||||| ||| ||||| || | ||| ||||| Sbjct 364 ACAGATCAGGCACCCAAAGAGCATAAAAAAGATCACGAGCTCT--GTTCT 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707355991317120