Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 244 1e-59
seq32757 176 6e-39
>seq39735
Length=4112
Score = 244 bits (270), Expect = 1e-59
Identities = 259/339 (76%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 183592 GCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTT 183651
|| |||||||| ||||| || ||| | ||| || |||| || | |||||||| |||
Sbjct 1646 GCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTT 1705
Query 183652 AGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCA 183711
||| |||||||| || || ||| ||| || || |||| ||| |||| ||||||||
Sbjct 1706 TCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCT 1765
Query 183712 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGT 183771
|||||||||||||| |||||||| || |||||||| ||||| |||||||| || || |||
Sbjct 1766 GAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGT 1825
Query 183772 TCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCAC 183830
|| || |||||||| ||||| |||||| |||| || | || | | | || | ||||||||
Sbjct 1826 TCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCAC 1884
Query 183831 TGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACAT 183890
|| ||| || || | ||||||| ||||||||||| ||||| ||||| || ||
Sbjct 1885 AGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATAT 1944
Query 183891 TGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCA 183929
|| || |||||||| || ||||| || ||||||||||
Sbjct 1945 CGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983
>seq32757
Length=9777
Score = 176 bits (194), Expect = 6e-39
Identities = 231/320 (72%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 183296 TTGCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGT 183355
|||| ||| | ||||| ||||| || || || || || || || ||||| ||| |||| |
Sbjct 3708 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 3767
Query 183356 CGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTG 183415
| | | || |||||||| || || || ||||| || | ||| |||| || || |
Sbjct 3768 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 3827
Query 183416 GACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTG 183475
| | ||||| || || || |||||||| || || | ||||| ||| | || |||||||
Sbjct 3828 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 3887
Query 183476 GTCCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTG 183535
| ||||| | || | || | |||||| | |||| || ||||| ||||||||||
Sbjct 3888 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTG 3947
Query 183536 AGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCAC 183595
|||||||| | || |||||| |||||||| |||||||| |||||| ||| || |
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 183596 CTGTTGCTGCTGCAACCGCT 183615
||||||| ||||| || |||
Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617202963499920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |