Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq39735 244 1e-59 seq32757 176 6e-39 >seq39735 Length=4112 Score = 244 bits (270), Expect = 1e-59 Identities = 259/339 (76%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 183592 GCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTT 183651 || |||||||| ||||| || ||| | ||| || |||| || | |||||||| ||| Sbjct 1646 GCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTT 1705 Query 183652 AGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCA 183711 ||| |||||||| || || ||| ||| || || |||| ||| |||| |||||||| Sbjct 1706 TCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCT 1765 Query 183712 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGT 183771 |||||||||||||| |||||||| || |||||||| ||||| |||||||| || || ||| Sbjct 1766 GAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGT 1825 Query 183772 TCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCAC 183830 || || |||||||| ||||| |||||| |||| || | || | | | || | |||||||| Sbjct 1826 TCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCAC 1884 Query 183831 TGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACAT 183890 || ||| || || | ||||||| ||||||||||| ||||| ||||| || || Sbjct 1885 AGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATAT 1944 Query 183891 TGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCA 183929 || || |||||||| || ||||| || |||||||||| Sbjct 1945 CGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 176 bits (194), Expect = 6e-39 Identities = 231/320 (72%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 183296 TTGCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGT 183355 |||| ||| | ||||| ||||| || || || || || || || ||||| ||| |||| | Sbjct 3708 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 3767 Query 183356 CGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTG 183415 | | | || |||||||| || || || ||||| || | ||| |||| || || | Sbjct 3768 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 3827 Query 183416 GACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTG 183475 | | ||||| || || || |||||||| || || | ||||| ||| | || ||||||| Sbjct 3828 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 3887 Query 183476 GTCCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTG 183535 | ||||| | || | || | |||||| | |||| || ||||| |||||||||| Sbjct 3888 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTG 3947 Query 183536 AGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCAC 183595 |||||||| | || |||||| |||||||| |||||||| |||||| ||| || | Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 183596 CTGTTGCTGCTGCAACCGCT 183615 ||||||| ||||| || ||| Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617202963499920