Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq39735 253 2e-62 seq32757 203 4e-47 >seq39735 Length=4112 Score = 253 bits (280), Expect = 2e-62 Identities = 263/345 (76%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 164318 TACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGT 164377 || || |||||||| || || || | ||| | ||| || |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 164378 TCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTC 164437 || ||||| | |||||||| || |||||||| || ||||||| |||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 164438 CAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTT 164497 || ||||||||||||||||| |||||||| || || ||||| || || || ||||| ||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 164498 GGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAG 164557 |||||||| || |||||||| ||||| ||||| |||| || ||| || | | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 164558 ACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTAC 164617 ||||| |||||||| || || | ||||||| || ||||| || ||||||||||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 164618 AACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAA 164662 || ||||| |||||||| ||||| ||||| || |||| |||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 203 bits (224), Expect = 4e-47 Identities = 244/328 (74%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || || || ||||| | ||| ||||| || || || ||||| || || ||||| || Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 |||| || | | || |||||||| || || || ||||| |||||||| ||||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200 ||||| ||| ||||||| ||||| || |||||||| || | | || |||||| | ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTG--GCATCTATGCTTACA 164258 |||||||| |||| | || |||| | |||||| | ||| | | || ||| || | Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATA 3938 Query 164259 TGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCAT 164318 |||||||||||||||||||| || |||||| |||||||| ||||||||| || |||| Sbjct 3939 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998 Query 164319 ACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | || |||||||| || || || | ||| Sbjct 3999 ATTCAGCTCCTGTTGCAGCTGCTACTGC 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553290991323120