Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 248 1e-60
seq32757 179 4e-40
seq455362 86.0 7e-12
>seq39735
Length=4112
Score = 248 bits (274), Expect = 1e-60
Identities = 264/346 (76%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 177988 TACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGT 178047
|| || ||||| || || || || ||||| | ||| | | || || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 178048 TCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTC 178107
|| ||||||| |||||| || || ||| ||| || ||||||| |||| |||| |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 178108 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTT 178167
||||| |||||||||||||| |||||||| || |||||| | || || |||||||| |||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 178168 GGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGA 178226
|| ||||| || |||||||| ||||| |||||| |||| || | || | | | || | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878
Query 178227 AACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTA 178286
|||||| || || ||| | || | ||||||| ||||||||||| ||||| |||||
Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938
Query 178287 CAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAA 178332
|| ||||| || ||||||||||| || || || |||||||||||
Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 179 bits (198), Expect = 4e-40
Identities = 234/320 (73%), Gaps = 4/320 (1%)
Strand=Plus/Plus
Query 177700 GCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCC 177759
|||||| | ||||| ||||| || || || || || || |||||||| || |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 177760 CTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGT 177819
| | || || ||||| || ||||| ||||| || | ||| ||||| ||||| |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 177820 CTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGT 177879
| ||||| || || || |||||||| |||||| | ||||| ||| | ||||| |||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 177880 CCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTG 177937
|||| | || || | | |||||| | | ||| | || ||| || ||||||||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947
Query 177938 AGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTC 177997
||||||||||| || ||| || |||||||| || ||||| ||| ||||| || ||||
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 177998 CAGTCGCCGCAGCATCTGCT 178017
| || || || || |||||
Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027
>seq455362
Length=6327
Score = 86.0 bits (94), Expect = 7e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684
|| ||||| || | || ||||| |||| ||||||||||||| | | | || ||
Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 814
Query 177685 ATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGA 177743
||||| || || | |||||| | ||||| ||||| || || || || || || |||||
Sbjct 813 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 755
Query 177744 ACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTC 177803
||| || |||| || | | || || ||||| || ||||| ||||| || | ||| |
Sbjct 754 ACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTAC 695
Query 177804 TTCTAACGCTATTGGT 177819
|||| ||||| |||
Sbjct 694 TTCTGCAGCTATAGGT 679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591641349590560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |