Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq39735 248 1e-60 seq32757 179 4e-40 seq455362 86.0 7e-12 >seq39735 Length=4112 Score = 248 bits (274), Expect = 1e-60 Identities = 264/346 (76%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 177988 TACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGT 178047 || || ||||| || || || || ||||| | ||| | | || || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 178048 TCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTC 178107 || ||||||| |||||| || || ||| ||| || ||||||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 178108 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTT 178167 ||||| |||||||||||||| |||||||| || |||||| | || || |||||||| ||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 178168 GGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGA 178226 || ||||| || |||||||| ||||| |||||| |||| || | || | | | || | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878 Query 178227 AACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTA 178286 |||||| || || ||| | || | ||||||| ||||||||||| ||||| ||||| Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 178287 CAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAA 178332 || ||||| || ||||||||||| || || || ||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 179 bits (198), Expect = 4e-40 Identities = 234/320 (73%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 177700 GCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCC 177759 |||||| | ||||| ||||| || || || || || || |||||||| || |||| || Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 177760 CTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGT 177819 | | || || ||||| || ||||| ||||| || | ||| ||||| ||||| ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 177820 CTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGT 177879 | ||||| || || || |||||||| |||||| | ||||| ||| | ||||| ||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 177880 CCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTG 177937 |||| | || || | | |||||| | | ||| | || ||| || |||||||||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947 Query 177938 AGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTC 177997 ||||||||||| || ||| || |||||||| || ||||| ||| ||||| || |||| Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 177998 CAGTCGCCGCAGCATCTGCT 178017 | || || || || ||||| Sbjct 4008 CTGTTGCAGCTGCTACTGCT 4027 >seq455362 Length=6327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684 || ||||| || | || ||||| |||| ||||||||||||| | | | || || Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 814 Query 177685 ATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGA 177743 ||||| || || | |||||| | ||||| ||||| || || || || || || ||||| Sbjct 813 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 755 Query 177744 ACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTC 177803 ||| || |||| || | | || || ||||| || ||||| ||||| || | ||| | Sbjct 754 ACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTAC 695 Query 177804 TTCTAACGCTATTGGT 177819 |||| ||||| ||| Sbjct 694 TTCTGCAGCTATAGGT 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591641349590560