Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq39735 248 1e-60 seq32757 161 1e-34 >seq39735 Length=4112 Score = 248 bits (274), Expect = 1e-60 Identities = 262/345 (76%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 169742 TACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGG 169801 || || ||||| ||||| || || | ||| ||||| || ||||||| |||| ||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 169802 TCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTC 169861 || ||||||| ||||||||| || ||||| || || || |||| |||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 169862 CAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTT 169921 |||||||||||||||||||| |||||||| || |||||||| ||||| || || || ||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 169922 GGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAA 169981 || || || || || || || ||||| ||| | || || || ||| | || | ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 169982 ACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTAC 170041 ||||| || || || || || | ||||||| ||||||||||| ||||| ||||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 170042 AACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAA 170086 || ||||| |||||||| ||||| || || || ||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 161 bits (178), Expect = 1e-34 Identities = 231/322 (72%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 169445 TTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTT 169504 || || || || ||||| | ||| || || || || || || || || || ||||| ||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 169505 GCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAAC 169564 |||| ||| | | || || ||||| || || || ||||| || | || |||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 169565 GCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTAC 169624 || || ||| | ||||| || || || |||||||| || | | ||||||||||| ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 169625 AACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCG--GCATCTATGCTTACA 169682 |||||||| |||| | || |||| | |||||| | | | | | || ||| || | Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATA 3938 Query 169683 TGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTT 169742 ||||||||||||||||| | | ||||||||||||||||||||||| |||||| | Sbjct 3939 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998 Query 169743 ACTCTGCTCCCGTTGCGGCAGC 169764 | || ||||| ||||| || || Sbjct 3999 ATTCAGCTCCTGTTGCAGCTGC 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587564699204320