Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1642 105 1e-17 seq1605 105 1e-17 seq8648 104 5e-17 seq165 104 5e-17 seq341 102 2e-16 seq70293 100 6e-16 seq5789 100 6e-16 seq8127 98.7 2e-15 seq5982 98.7 2e-15 seq5914 98.7 2e-15 seq5055 98.7 2e-15 seq2805 98.7 2e-15 seq1765 98.7 2e-15 seq1610 98.7 2e-15 seq823 98.7 2e-15 seq687 98.7 2e-15 seq649 98.7 2e-15 seq100 98.7 2e-15 >seq1642 Length=98845 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 9279 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9338 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 9339 CCCCACGGTGGGC 9351 >seq1605 Length=203932 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 41965 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42024 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 42025 CCCCACGGTGGGC 42037 >seq8648 Length=39181 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 32526 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32467 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32466 CCCACGGTGGGC 32455 >seq165 Length=271287 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 78375 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 78316 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 78315 CCCACGGTGGGC 78304 >seq341 Length=228855 Score = 102 bits (112), Expect = 2e-16 Identities = 303/460 (66%), Gaps = 12/460 (3%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || ||||| |||||| | |||||| | || |||||||| ||| | || || || || Sbjct 2935 TCCTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGC 2876 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||| || |||||||| ||| ||| | |||||||| | | | || ||| Sbjct 2875 TTCTGCGCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGAAC 2816 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||||| ||| ||| || ||||| | || | || | || |||| | | || Sbjct 2815 GAGTTGATCTCTCGAGATGAGGGCTTACACTGTGATTTTG-CGTGCTTGC-TCTACAGC- 2759 Query 230350 CTCCAGAACAAGCTACCATTCGAGA--CG-GTCAAACAAATCATTACAGAAGCAGTTGAA 230406 || | || | | || ||| || ||||| || ||| | || || || ||| Sbjct 2758 CTGCTGAGGATGAAACTGAGTGAGGATCGAGTCAAGGGGATTATTGCTGATGCCGTAGAA 2699 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAA 230466 | || | ||| || |||| || || |||| ||| ||| |||| ||||||| ||| Sbjct 2698 ATTGAGAGGGAATTTGTTTGCGAAGCCCTTCCTTGTGCCCTGGTTGGGATGAACGGTGAT 2639 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | |||||||| ||||||||||| || || | || || |||||| ||| Sbjct 2638 CTGATGAGTCAGTACATTGAATTCGTAGCTGATCGACTGTTGAATGAACTTGGGTACAGC 2579 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA---GCTCATTTCGCTTCAAGGG 230583 ||| | ||||| | ||||| |||| | ||||| | ||| || | || ||| Sbjct 2578 AAATTATACAATGTGCAAAACCCATTTGATTGGATGGAATTGATCAGTT---TGCAGGGG 2522 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || || || ||||| || ||| | || |||| || |||| Sbjct 2521 AAAACGAATTTCTTTGAGAAGAGGGTTGGTGAATACCAGA 2482 >seq70293 Length=1295 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| ||||||||||| || || |||| || ||||||||||||||||| Sbjct 812 TGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 753 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 752 CCCCACGGTGGGC 740 >seq5789 Length=156989 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 49485 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 49544 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 49545 CCCCACGGTGGGC 49557 >seq8127 Length=67524 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2519 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2578 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2579 CCCACGGTGGGC 2590 >seq5982 Length=115942 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 99868 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 99927 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 99928 CCCACGGTGGGC 99939 >seq5914 Length=56761 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 50551 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 50610 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 50611 CCCACGGTGGGC 50622 >seq5055 Length=105958 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 56009 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56068 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 56069 CCCACGGTGGGC 56080 >seq2805 Length=141015 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 55102 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 55043 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 55042 CCCACGGTGGGC 55031 >seq1765 Length=195118 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 50781 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 50840 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 50841 CCCACGGTGGGC 50852 >seq1610 Length=129570 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18189 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18130 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18129 CCCACGGTGGGC 18118 >seq823 Length=190768 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 165603 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 165544 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 165543 CCCACGGTGGGC 165532 >seq687 Length=271479 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 239016 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 238957 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 238956 CCCACGGTGGGC 238945 >seq649 Length=148848 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 106483 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 106424 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 106423 CCCACGGTGGGC 106412 >seq100 Length=450663 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 23776 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23717 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23716 CCCACGGTGGGC 23705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056610770084450