Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3095 156 4e-33 seq341 140 3e-28 seq58707 87.8 2e-12 seq6036 87.8 2e-12 >seq3095 Length=123113 Score = 156 bits (172), Expect = 4e-33 Identities = 562/869 (65%), Gaps = 15/869 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA--GATATATTCT 16733 ||||| || | ||| | || || || || || ||||| |||| || | ||| |||| Sbjct 111873 TGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAATTC- 111815 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||| ||||||| || || | | ||| ||| ||| || ||| | | | Sbjct 111814 -CATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCAGCA 111756 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||| ||||||||||| || ||||| | ||| | || | |||||||| | || Sbjct 111755 GTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCAGG- 111697 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || |||||||| || | |||| ||| ||| | ||||| || || || Sbjct 111696 GCACAAGGAAGAGCATCGCAGACAAATTCCCTCTCGATATCCACCGCGTCAGCAACAAGT 111637 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTT--TAAGATGTTTAAACATCAGACATGCGA 16970 | ||||| |||||| | | || | | | ||| | | | | ||| || || | Sbjct 111636 CCCTTGACTCGATCCTCG--CTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAGCAA 111579 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 |||| || ||||| ||||| |||| ||| | ||||| ||||| || || || |||| Sbjct 111578 AATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAGGCA 111519 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | ||| || || |||| ||||||||||||| ||| || || ||||| || || | Sbjct 111518 TTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAAATCCCTT 111459 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATT 17150 ||||| | ||||| |||| || || || ||| | | ||| | |||||| Sbjct 111458 CGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGAT---TCTGAGCCGTCAATCCAGC 111402 Query 17151 TCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATT 17210 | |||||| ||| || | | | ||| | || || || || | || | Sbjct 111401 GGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAAGCC 111342 Query 17211 TCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGT 17270 | || |||| || ||||||| | || | || || |||||||| ||||| | Sbjct 111341 GATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGGAAT 111282 Query 17271 GTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGCTTCCGCTATTTGAACT 17329 | || ||||| || || ||||| || || ||||| ||| || || |||| |||||||| Sbjct 111281 GGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCA-CGCGCCTCCGAGATTTGAACC 111223 Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || ||| | | |||||||| || || ||||||||| ||||| ||||| Sbjct 111222 TCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAAAG 111163 Query 17390 GCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAA 17449 || | | |||||||||||||| || || ||| || | ||||| || || | Sbjct 111162 GCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTACA 111103 Query 17450 TCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATA 17509 || | ||| | ||| || ||||| | |||||||| ||| ||||||| || ||||| Sbjct 111102 TCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACATT 111043 Query 17510 TTCCAAATATCATTGTATTGTATGGGGAA 17538 | |||||| | ||||| || ||||| Sbjct 111042 TCCCAAATTTGGGGATATTGAATTGGGAA 111014 >seq341 Length=228855 Score = 140 bits (154), Expect = 3e-28 Identities = 366/555 (66%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || ||||| || ||||| ||||| |||| ||| | ||||| || || || || Sbjct 2772 CACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAAT 2831 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| |||||| ||||||| ||||||||| ||| ||| || || ||||| Sbjct 2832 CCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAGAAA 2891 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || || || ||| | || || |||| || || || || | | | ||| | | Sbjct 2892 ATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGAC---TCTGAGCCATCG 2948 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| | |||||| ||| || | || | ||| | || || || || | Sbjct 2949 ATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTGG 3008 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | | | || |||| || | ||||| | || | || || |||||||| Sbjct 3009 AAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTACATC 3068 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGCTTCCGCTAT 17322 || || || || ||||| || || || || || || ||||| ||| || || |||| || Sbjct 3069 TCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCA-CGAGCCTCCGAGAT 3127 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 |||||| ||| ||| | | | || || || || ||||||||||| ||||| Sbjct 3128 TTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGCGGC 3187 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTC 17442 |||||| || | || ||||||||||||| || |||||| || || ||||| Sbjct 3188 GAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGTG 3247 Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502 || || ||| | ||| | ||| || ||||| | |||||||| ||| |||| || || Sbjct 3248 CTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTCTT 3307 Query 17503 ATACATATTCCAAAT 17517 ||||| | |||||| Sbjct 3308 GTACATTTCCCAAAT 3322 >seq58707 Length=1165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCA 17307 || || ||| |||| ||||| || || ||||| || || || || || || ||||| ||| Sbjct 672 AGAAGACTGAACATCTCGGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCA 731 Query 17308 TCGGGCTTCCGCTATTTGAACTTCCA-CGTAGAATCGTTCCGCTAGATTTTCGTTCACGA 17366 || || |||| |||||||| ||| | || |||| | || || || || |||| Sbjct 732 -CGAGCCTCCGAGATTTGAACCTCCTTCATA-AATCTTCTGGCGAGGTTCTCCAAAACGA 789 Query 17367 TGCCGTCGCTCGCGGCGAAAAACGCCAATATA-TGCTTAATGAAATATTTTTCGTCCGGT 17425 | |||| ||||||||||| | ||| | ||||||||||||| || |||||| Sbjct 790 TATCGTCTGAGGCGGCGAAAAAGGACAAGAACGTGCTTAATGAAATGCTTCTCGTCCTCG 849 Query 17426 GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAA 17485 | | | ||||| || || ||| | ||| | ||| || ||||| | ||||||| Sbjct 850 ATCAAATTTTCCCAGTGCTATATATCCTGGGACAAATCGACCTCTTCCGCTCTCCAAAAC 909 Query 17486 CTA-GCCACTGCCTTTTTATACATATTCCAAAT 17517 | | | |||| || || ||||| |||||||| Sbjct 910 TGAGGTCTCTGCTTTCTTGTACATTTTCCAAAT 942 >seq6036 Length=74774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || || ||||| | |||||| ||||| ||||||||||| || |||||| Sbjct 63484 AGGCAAGCAAAGTCACAATGAAGTCCCTCATCTCTCGAAATAAGTTCGTTTGAGAATGTC 63543 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGC 17061 || || |||||| |||| || ||||||| ||||||||| || Sbjct 63544 AAGCCTGGCATCATTCCCCGCTTCTTTAGCCAAAATATTGC 63584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516966498820200